@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25080: (2016-07-09 )
MKVANDYEKRDNNSYYVDHGSEGTNITRDNDGFFEETAAEIAEPYRAADRSNDQDNDRSGGNVNEGRGIGYIALALSIISLFVLPVLLGAAGIIVGYIARRRGAQGLGAWAMGIGVVSLVLGIFIIPFF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-..10........--20........30....----....40........50......-..60........70........80..-......90........100-------....--...110---------.........120.......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKVA
N
D
Y
-EKRDNN
S
Y
Y
V
DH--GSEGTNITRDNDG
F
F
E
----
E
T
A
A
E
I
A
E
P
Y
RAADRSNDQDND-RSGGNVNEGRG
I
G
Y
I
A
L
A
L
S
I
I
S
L
F
V
-
L
P
V
L
L
G
A
A
G
I
I
V
G
Y
I
A
R
RR-------GAQG--
L
G
A
W
-----------
A
M
G
I
G
V
V
S
L
V
L
G
I
F
IIPFF------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
75.02
28%
81
- C3 -
3SIG
1
?
A:
[134-224]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
H
H
R
Q
R
D
P
L
Y
S
D
H
L
I
Y
S
P
G
V
P
V
F
R
D
D
A
G
R
L
L
----
E
------
E
P
Y
R
V
A
F
L
T
S
P
A
P
N
R
-
R
A
I
G
D
L
R
T
V
E
E
I
G
R
---------------
V
L
R
G
R
A
A
K
V
L
A
-
A
A
R
H
H
-------
G
H
R
R
L
V
L
G
A
W
-----------
G
C
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
74.71
28%
78
- C3 -
3SII
1
?
A:
[134-224]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
H
H
R
Q
R
D
P
L
Y
S
D
H
L
I
Y
S
P
G
V
P
V
F
R
D
D
A
G
R
L
L
----
E
------
E
P
Y
R
V
A
F
L
T
S
P
A
P
N
R
-
R
A
I
G
D
L
R
T
V
E
E
I
G
R
---------------
V
L
R
G
R
A
A
K
V
L
A
-
A
A
R
H
H
-------
G
H
R
R
L
V
L
G
A
W
-----------
G
C
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
74.68
28%
90
- C3 -
3SIH
-
?
A:
[136-226]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
H
H
R
Q
R
D
P
L
Y
S
D
H
L
I
Y
S
P
G
V
P
V
F
R
D
D
A
G
R
L
L
----
E
------
E
P
Y
R
V
A
F
L
T
S
P
A
P
N
R
-
R
A
I
G
D
L
R
T
V
E
E
I
G
R
---------------
V
L
R
G
R
A
A
K
V
L
A
-
A
A
R
H
H
-------
G
H
R
R
L
V
L
G
A
W
-----------
G
C
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
72.88
28%
85
- C3 -
3SIJ
-
?
A:
[136-226]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
H
H
R
Q
R
D
P
L
Y
S
D
H
L
I
Y
S
P
G
V
P
V
F
R
D
D
A
G
R
L
L
----
E
------
E
P
Y
R
V
A
F
L
T
S
P
A
P
N
R
-
R
A
I
G
D
L
R
T
V
E
E
I
G
R
---------------
V
L
R
G
R
A
A
K
V
L
A
-
A
A
R
H
H
-------
G
H
R
R
L
V
L
G
A
W
-----------
G
C
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
65.62
17%
20
- C3 -
3WKX
2
HYBA1_BIFL2
A:
[1-659]
M
N
V
T
I
TS
P
F
W
K
R
R
R
D
Q
I
V
E
S
V
I
P
Y
Q
W
G
V
M
N
DE
I
D
T
T
V
P
DDPAGNQ
L
A
D
S
K
SH
A
V
A
N
L
K
V
A
A
GE
L
D
D
E
F
HGMVF
Q
D
S
D
V
Y
K
W
L
E
E
A
A
Y
A
L
A
Y
HPD
P
E
L
K
A
L
C
D
R
T
V
D
L
I
A
R
A
QQSDGYLD
T
P
Y
Q
I
KSGVWADRPRFSLIQQSH
E
M
Y
V
M
G
H
Y
I
E
A
A
V
A
Y
H
Q
V
TGN
E
Q
A
L
E
V
A
K
K
M
A
D
C
L
D
A
N
F
GPEEGKIHGADGHPE
I
E
L
A
L
A
K
L
Y
E
E
TGE
K
R
Y
L
T
L
S
Q
Y
L
I
D
V
R
G
Q
D
P
Q
F
Y
A
K
--
Q
L
K
A
M
N
G
D
N
I
F
H
G
F
Y
K
----
P
T
Y
F
Q
A
A
E
P
V
R
D
Q
Q
T
A
D
G
H
------------
A
V
R
V
G
Y
L
C
T
G
V
A
H
V
G
R
L
L
G
D
Q
G
L
I
D
T
A
K
R
F
W
K
N
I
V
T
R
R
MYVTGAI
G
S
T
H
--
V
G
E
S
FTYDYDLPNDT
M
Y
G
E
T
C
A
S
V
A
M
S
M
F
A
Q
Q
M
L
D
L
EPK
G
E
Y
A
D
V
L
E
K
E
L
F
NG
S
I
A
G
I
SLDGK
Q
Y
Y
YVNALETTPDGLDNPDRHHVLSHRVDWFGCACC
P
A
N
I
A
R
L
I
A
S
VDRYI
Y
T
E
R
DGGK
T
V
L
S
H
Q
FI
A
N
T
A
E
F
ASG
L
T
V
E
Q
R
S
NFPWDG
H
V
E
Y
T
V
S
L
P
ASATDS
S
V
R
F
G
L
R
I
P
GWSRG
S
Y
T
L
T
V
NGKPAVGSLEDG
F
V
Y
L
V
V
N
AG
D
T
L
E
I
A
L
E
L
DMSV
K
F
V
R
A
NSRVRSDAG
Q
V
A
V
M
R
GP
L
V
Y
C
A
E
QVDNPGDLWN
Y
R
L
A
D
GVTGAD
A
A
V
A
F
Q
ADLLG
G
V
D
T
V
D
L
P
A
V
R
E
H
ADEDDAPLYVDADE
P
R
A
G
E
P
A
T
L
R
L
V
PYYSWANR
E
I
G
E
M
R
V
F
Q
R
R
A
17
PsiBlast_PDB
65.39
23%
-250
- C3 -
5D5A
4
ENLYS_BPT4
A:
[36-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
V
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
64.67
23%
-233
- C3 -
2RH1
4
ADRB2_HUMAN (first)
A:
[36-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
V
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
64.00
23%
-242
- C3 -
5D5B
4
ENLYS_BPT4
A:
[36-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
V
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
63.87
23%
-242
- C3 -
3NY9
3
ADRB2_HUMAN (first)
A:
[40-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
62.58
23%
-244
- C3 -
3D4S
3
ENLYS_BPT4
A:
[40-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
62.22
20%
-263
- C3 -
4IB4
5
5HT2B_HUMAN (first)
A:
[25-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
N
K
L
H
W
A
A
L
---
L
I
L
M
V
I
-
I
P
T
I
G
G
N
T
L
V
I
L
A
V
S
L
E
K
K
-------
L
Q
Y
A
--
T
N
Y
F
-----------
L
M
S
L
A
V
A
D
L
L
V
G
L
F
V
M
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
62.19
23%
-246
- C3 -
3NYA
2
ADRB2_HUMAN (first)
A:
[40-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.98
23%
-247
- C3 -
3NY8
4
ENLYS_BPT4
A:
[40-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
55.50
14%
-26
- C3 -
2LVS
-
?
A:
[1-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
S
V
N
-
D
S
L
D
I
V
E
K
L
Y
K
D
--
G
V
P
V
K
E
I
A
K
R
S
-
N
N
S
M
----
S
T
V
Y
K
A
L
E
K
L
E
A
M
G
R
I
K
R
R
K
G
R
Y
R
Q
H
R
R
L
T
E
E
E
L
A
T
I
R
E
L
Y
L
K
G
A
T
V
Y
E
-
I
A
R
Q
L
G
R
P
E
S
T
I
Y
Y
A
L
K
K
L
-------
G
-----------------------------------
L
K
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
50.83
12%
5
- C3 -
3P8C
1
BRK1_HUMAN
E:
[10-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
I
H
Q
D
W
-
A
N
R
E
Y
I
E
I
I
T
S
S
--
I
K
K
I
A
D
F
L
N
S
F
D
M
S
C
R
----
S
R
L
A
T
L
N
E
K
L
T
A
L
E
R
R
I
E
Y
I
E
A
-
R
V
T
K
G
E
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
49.32
23%
0
- C- -
3P0G
-
ENLYS_BPT4
A:
[31-263]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
------
V
T
Q
Q
R
D
E
V
W
V
V
G
M
G
I
V
M
S
L
I
V
-
L
A
I
V
F
G
N
V
L
V
I
T
A
I
A
K
F
E
R
-------
L
Q
T
V
--
T
N
Y
F
-----------
I
T
S
L
A
C
A
D
L
V
M
G
L
A
V
V
P
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
48.38
40%
-31
- C4 -
2BLF
2
?
A:
[211-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
W
V
K
H
--
L
N
E
I
T
V
I
D
K
E
F
D
G
F
W
M
----
K
T
A
Y
R
I
P
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
48.19
40%
-4
- C4 -
2C9X
2
?
A:
[211-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
W
V
K
H
--
L
N
E
I
T
V
I
D
K
E
F
D
G
F
W
M
----
K
T
A
F
R
I
P
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
47.69
19%
46
- C3 -
1NEI
-
YOAG_ECOLI
A:
[1-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
K
A
T
Y
T
V
T
V
T
N
--
N
S
N
G
V
S
V
D
Y
E
T
E
T
P
M
T
LLV
P
E
V
A
A
E
V
I
K
D
L
V
N
T
V
R
S
Y
D
T
E
N
E
-
H
D
V
C
G
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.58
40%
-8
* C4 *
2BPB
1
?
A:
[211-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
W
V
K
H
--
L
N
E
I
T
V
I
D
K
E
F
D
G
F
W
M
----
K
T
A
Y
R
I
P
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------