@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu31319: (2016-07-22 )
MTIFQRTIVVLIGTQLAASAVILFIFDLNSYNHFSGSFSWLHFLKELAGSFAFYLFSAGLFFLLIGLCAPSRKKKRISVHEKENSLK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......----..10...---....------.20.....----.-.-----------.30.....-.--------.-.40.------......----.50.......-.60......---..70........80...-...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
I
F
Q
R
T
----
I
V
V
L
IG
T
---
Q
L
A
A
------
S
A
V
I
L
F
I
F
----D-L-----------NSYNHFSG-
S
--------
F
-
S
W
L
H
------
F
L
K
E
L
A
----
G
S
F
A
F
Y
L
F
S
A
-
G
L
F
F
L
L
I
G
L---CAPSRKK
K
R
I
S
V
HEKEN-SLK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
71.67
22%
-166
- C6 -
2FFQ
1
RAB6B_HUMAN
A:
[67-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
L
N
S
F
Q
Q
-
T
--------
S
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
I
T
I
E
E
G
E
Q
-
R
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
71.59
22%
-151
- C6 -
2E9S
1
RAB6B_HUMAN
A:
[67-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
L
N
S
F
Q
Q
-
T
--------
S
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
I
T
I
E
E
G
E
Q
-
R
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
71.14
22%
-148
- C6 -
4DKX
1
RAB6A_HUMAN
A:
[78-146]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
A
A
A
V
V
V
Y
----
D
-
I
-----------
T
N
V
N
S
F
Q
Q
-
T
--------
T
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
V
S
I
E
E
G
E
R
-
K
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
71.12
22%
-153
- C6 -
3CWZ
1
RAB6A_HUMAN
A:
[71-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
V
N
S
F
Q
Q
-
T
--------
T
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
V
S
I
E
E
G
E
R
-
K
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.76
22%
-149
- C6 -
1YZQ
1
RAB6A_HUMAN
A:
[71-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
A
A
A
V
V
V
Y
----
D
-
I
-----------
T
N
V
N
S
F
Q
Q
-
T
--------
T
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
V
S
I
E
E
G
E
R
-
K
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.50
22%
-162
- C6 -
2GIL
1
RAB6A_HUMAN
A:
[66-134]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
V
N
S
F
Q
Q
-
T
--------
T
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
V
S
I
E
E
G
E
R
-
K
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
70.35
22%
-143
- C6 -
2Y8E
2
RAB6_DROME
A:
[79-147]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
T
N
S
F
H
Q
-
T
--------
S
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
S
D
K
R
Q
V
S
T
E
E
G
E
R
-
K
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
70.17
22%
-149
- C6 -
2FE4
1
RAB6B_HUMAN
A:
[67-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
L
N
S
F
Q
Q
-
T
--------
S
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
I
T
I
E
E
G
E
Q
-
R
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
69.16
22%
-146
- C6 -
3BBP
1
RAB6A_HUMAN
A:
[81-149]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
P
S
---
Y
I
R
D
------
S
T
V
A
V
V
V
Y
----
D
-
I
-----------
T
N
V
N
S
F
Q
Q
-
T
--------
T
-
K
W
I
D
------
D
V
R
T
E
R
----
G
S
---------
D
V
I
I
M
L
V
G
N
---
K
T
D
L
A
D
K
R
Q
V
S
I
E
E
G
E
R
-
K
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
58.16
19%
-60
- C6 -
2DST
-
?
A:
[2-123]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R
R
A
G
Y
L
HLYG
L
N
L
V
F
D
R
V
G
K
G
P
P
V
L
L
V
A
E
---
E
A
S
R
WP
E
A
L
P
E
G
Y
A
F
Y
L
L
----
D
-
L
-----------
P
G
Y
G
R
T
E
G
-
P
--------
R
-
M
A
P
E
------
E
L
A
H
F
V
----
A
G
F
A
V
M
M
N
L
G
-
A
P
W
V
L
L
R
G
L
G
L
A
L
G
P
H
L
E
A
L
G
L
R
A
L
P
A
E
G
V
E
V
A
E
V
L
S
S
K
L
S
YG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
57.46
26%
-254
- C6 -
2ZEJ
-
LRRK2_HUMAN
A:
[80-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
L
Y
L
A
V
Y
----
D
-
L
-----------
S
K
G
Q
A
E
V
D
-
A
--------
M
K
P
W
L
F
------
N
I
K
A
R
A
----
S
S
S
P
V
I
L
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
56.82
26%
-69
- C6 -
4XMM
-
NUP85_YEAST
D:
[47-744]
ILVPMTVNDQPIEKNGDKMP
L
K
F
K
L
G
PLSY
Q
N
M
A
F
I
TAKDKY
K
L
Y
P
V
R
IPRLDTS
K
E
F
S
A
Y
V
S
G
L
F
E
I
Y
R
D
LGDDRVFNVV
N
S
N
F
A
K
E
H
N
A
T
V
N
L
A
M
E
A
I
L
N
E
L
E
V
F
I
G
R
V
K
D
Q
DGRV
N
R
F
Y
E
L
E
E
S
L
T
V
L
N
C
L
R
T
M
YFILDGQDVEEN
R
S
E
F
I
E
S
L
L
N
W
I
N
R
SDGEPD
E
E
Y
I
E
QVFSVAGKKVFET
Q
Y
F
W
K
L
L
N
Q
L
V
L
R
GL
L
S
Q
A
I
G
C
I
E
R
SDLLPYLSDTC
A
V
S
F
D
A
V
S
D
S
I
E
L
L
K
Q
YPKDS
S
S
T
F
R
E
W
K
N
L
V
L
K
L
S
Q
A
F
G
S
SATDIS
G
E
L
R
D
Y
I
E
D
F
L
L
V
I
G
GN
Q
R
K
I
L
Q
Y
SRT
W
Y
E
S
F
C
G
F
L
L
YYIPSLEL
S
A
E
Y
L
Q
M
S
L
E
A
NVVDITNDW
E
Q
P
C
V
D
I
I
S
GKIHSI
L
P
V
M
E
S
L
D
S
C
----
T
A
A
F
T
A
M
---
I
C
E
A
------
K
G
L
I
E
N
I
F
EGLE
D
-
L
-----------
F
S
Y
R
N
G
M
A
-
S
--------
Y
-
M
L
N
S
------
F
A
F
E
L
C
----
S
-----
L
G
D
K
-
E
L
W
P
V
A
I
G
L
---
I
A
L
S
A
T
G
T
R
S
A
K
K
M
V
I
A
-
E
L
L
PHYPFVT
N
D
D
I
E
W
M
L
S
I
C
V
E
W
RL
P
E
I
A
K
E
I
Y
T
T
L
G
NI
E
S
I
A
N
F
SL
V
K
S
Y
S
W
L
L
F
E
A
S
C
M
E
G
Q
KV
L
N
A
I
V
S
KD
D
V
I
I
P
Q
D
I
LV
T
N
S
M
R
Q
T
L
A
P
Y
A
V
L
S
Q
F
YD
R
E
D
W
G
Q
A
L
R
L
L
L
L
L
I
E
FH
Y
L
V
L
L
V
A
K
F
L
Y
P
I
FE
D
S
V
A
T
V
I
E
V
I
E
T
K
WS
N
L
Y
E
T
I
I
E
A
D
K
SA
T
L
L
K
N
L
R
K
K
L
N
F
K
L
C
Q
A
F
M
33
HHSearch
53.09
15%
-381
* C6 *
3OES
-
REBL1_HUMAN
A:
[93-135]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
G
------
V
H
G
Y
V
L
V
Y
----
S
-
V
-----------
T
S
L
H
S
F
Q
V
-
I
--------
E
-
S
L
Y
Q
------
K
L
H
E
-------
R
V
P
V
V
L
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
51.56
26%
-244
- C6 -
3C5C
-
RASLC_HUMAN
A:
[92-134]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
A
F
L
V
V
Y
----
S
-
V
-----------
D
S
R
Q
S
F
D
S
-
S
--------
S
-
S
Y
L
E
------
L
L
A
L
H
A
K
E
TQ
R
S
I
P
A
L
L
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
50.06
22%
-294
- C6 -
3CPJ
-
YPT31_YEAST
B:
[83-149]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
G
------
A
V
G
A
L
I
V
Y
----
D
-------------
S
K
S
S
S
Y
E
N
-
C
--------
N
-
H
W
L
S
------
E
L
R
E
N
A
----
D
-
V
A
V
G
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
49.53
12%
-98
- C6 -
3V9O
7
?
A:
[13-139]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALLHPRLAD
C
R
R
L
Y
L
R
N
H
E
----
V
Y
M
N
I
G
A
G
E
Q
R
V
V
I
------
N
V
D
L
F
V
P
L
----
A
-
L
TTPVEDKLREV
V
D
Y
D
L
M
K
Q
-
S
--------
V
-
A
Q
C
V
A
R
GHIH
L
Q
E
T
L
C
----
D
A
I
A
A
S
L
L
A
H
D
A
V
R
A
V
R
V
S
T
---
E
K
P
D
A
Y
P
D
C
D
A
V
G
V
E
V
F
-
R
I
K
D------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
47.84
17%
-236
- C6 -
3Q3J
-
RND1_HUMAN
B:
[98-139]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
------
S
D
A
V
L
L
C
F
----
D
-
I
-----------
S
R
P
E
T
V
D
S
A
L
--------
K
-
K
W
R
T
------
E
I
L
D
Y
C
----
P
S
T
R
V
L
L
I
G
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
46.26
29%
-185
- C6 -
4TLM
-
?
A:
[531-601]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
P
F
Q
S
T
----
L
W
L
L
V
G
L
---
S
V
H
V
------
V
A
V
M
L
Y
L
L
----
D
R
F
-----------
S
---------L
T
L
S
S
A
M
W
F
-
S
W
R
V
------
L
L
N
S
G
L
----
G
E
G
A
P
R
S
F
S
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
46.09
22%
-362
- C6 -
1M2O
-
SAR1_YEAST
B:
[92-133]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
I
V
F
L
V
----
D
-
A
-----------
A
D
P
E
R
F
D
E
-
A
--------
R
-
V
E
L
D
------
A
L
F
N
I
A
EL--
K
D
V
P
F
V
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
42.68
20%
-132
- C6 -
2K53
-
?
A:
[1-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
I
T
K
D
M
-------
I
I
A
D
---
V
L
Q
M
------
D
R
G
T
A
P
I
F
----
I
-
N
-----------
N
G
M
H
C
L
G
C
-
P
--------
S
-
S
M
G
E
------
S
I
E
D
A
C
----
A
V
H
---------------
G
I
---
D
A
D
K
L
V
K
E
L
N
E
Y
F
E
K
K
E
-
V
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------