@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38210: (2016-08-03 )
MYIIMGVFTTIVNIASFYILVEIMNVDYKAATVAAWILSVLFAYITNKLYVFQQKTHDLQSLLKELTAFFSVRVLSLGIDLGMMIILVGQFNTNETLAKILDNAVIVVVNYVASKWLVFKKTKEEGV
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------.........10..---------......-20..----......30-----.....-------------------------------..-------.40....-----.--------....-50....--....60...--.-.--...70--....---.....80----.........90.....-..--.100.......110......----.120.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------
M
Y
I
I
M
G
V
F
T
T
I
V
N
---------
I
A
S
F
Y
I
-
L
V
E
I
----MNVDY
K
A
A
-----
T
V
A
A
W
-------------------------------
I
L
-------
S
V
-
L
F
A
Y
-----I--------TN
K
L
-
Y
V
F
QQK--
T
H
D
L
Q
S
L
L
K
--
E
-
L
--
T
A
F
F
---
S
V
R
V
---
L
S
LGID-----
L
G
M
M
I
I
L
V
GQFNT
N
E
T
-
L
A
--
K
I
LDN
A
V
I
V
V
V
N
Y
VASK
W
L
V
----
F
K
KTKEEGV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
76.03
23%
6
- C- -
3UUN
-
DMD_HUMAN
A:
[338-453]
-----------------------------------------------------------------------------------------------------------------
E
V
N
L
----
D
R
Y
Q
T
A
L
E
-----
E
V
L
S
W
-------------------------------
L
L
-------
S
A
-
E
D
T
L
Q
A
QGE
I
--------
S
N
D
V
-
E
V
V
K
D
Q
--
F
H
T
H
E
G
Y
M
M
--
D
-
L
--
T
A
H
Q
---
G
-
R
V
---
G
N
I
-
L
Q
-----
L
G
S
K
L
I
G
T
G
K
L
S
---------
E
D
E
E
T
E
V
Q
E
Q
M
N
L
L
N
S
R
W
E
C
----
L
R
V
A
S
M
E
K
Q
S
N
L
H
R
V
L
M
D
LQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
70.78
16%
-188
- C5 -
2N3Z
-
?
A:
[1-99]
----------------------------------------------------------------------------------------
M
G
R
L
V
V
V
V
T
-------------------------
S
E
Q
L
K
E
E
-----
V
R
K
K
F
-------------------------------------------------------------
P
Q
V
E
-
V
R
L
V
T
T
--
E
E
D
A
K
Q
V
I
K
--
E
-
I
--
Q
K
K
G
---
V
Q
K
V
---
V
L
V
G
V
S
-----
E
K
L
L
Q
K
I
K
Q
E
A
N
V
--------------
Q
V
Y
R
V
T
S
N
D
E
L
E
Q
V
----
V
K
D
V
K
G
S
G
L
E
H
H
H
H
H
H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
64.60
28%
-73
- C3 -
2OZB
1
PRP31_HUMAN
B:
[34-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-------
N
I
-
I
H
K
F
-----
I
--------
R
D
K
----
Y
S
K
R
--
F
P
E
L
E
S
L
V
P
--
N
A
L
--
D
Y
I
R
---
T
V
K
E
---
L
G
N
S
L
D
--------------
K
C
K
N
N
E
N
-
L
Q
--
Q
I
L
T
N
A
T
I
M
V
V
S
V
T
A
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
64.12
25%
-175
- C4 -
4US3
13
?
A:
[10-450]
GREQWASRL
G
F
I
L
A
A
M
G
S
A
VGLGNI
W
R
F
S
Y
V
T
G
E
N
GG
A
A
F
L
L
V
Y
L
G
F
I
A
LI
G
I
P
I
V
L
A
E
F
T
I
G
R
R
A
QSD
A
V
G
S
F
E
K
L
APGKPWK
V
A
G
L
M
G
V
A
A
G
F
L
----------
I
L
S
F
Y
-----------------
G
-----
V
I
A
G
W
-------------------------------
I
L
-------
F
Y
-
L
F
N
Y
-----
I
--------
T
G
Q
L
-
W
S
A
P
A
E
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G
G
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F
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F
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A
NP
T
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L
--
P
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F
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---
Q
A
L
F
---
M
I
A
T
I
W
-----
I
V
A
I
G
V
K
K
G
I
E
R
S
N
K
I
-
L
M
--
P
L
L
G
V
L
L
I
A
L
A
I
Y
S
L
T
L
---------
G
G
A
K
E
G
L
A
F
L
FSPDWSALKD
P
G
V
Y
L
A
A
I
S
Q
A
F
F
T
L
SLGMG
A
L
I
T
Y
G
S
Y
VSKDSR
L
P
G
A
A
V
S
V
A
G
L
D
T
A
F
A
I
I
A
G
I
M
I
F
P
A
V
F
A
L
GLSPSGGPG
L
V
F
V
V
L
P
D
I
F
D
S
IRL
G
P
I
V
G
I
A
F
F
I
L
L
G
A
A
A
L
S
S
A
V
S
L
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E
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P
V
A
Y
F
M
R
K
F
DWS
R
K
Q
A
A
I
T
L
G
V
I
I
T
L
L
G
I
P
S
S
L
S
F
GVLGEVTIIPGLN
I
F
D
S
V
D
F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
F
I
G
WGWK
T
S
D
A
L
A
E
S
DLTDS
V
W
G
K
L
W
I
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S
L
R
F
I
A
P
I
A
I
L
I
V
F
L
S
A
F
18
Fugue
62.54
20%
3
- C2 -
4QT4
-
PTH_STRPZ
A:
[1-189]
-------------------------------------------M
V
K
M
I
V
G
L
G
N
P
G
SKYEKTKHN
I
G
F
M
A
I
D
N
I
V
K
N
L
D
V
T
F
T
DD
K
N
F
K
A
Q
I
G
S
T
F
I
N
---------
H
E
K
V
Y
F
-
V
K
P
T
----
T
F
M
N
N
S
G
I
-----
A
V
K
A
L
-------------------------------
L
T
Y
Y
NIDIT
D
L
-
I
V
I
Y
-----
D
D
LDME---
V
S
K
L
-
R
L
R
S
K
G
--
S
A
G
G
H
N
G
I
K
--
S
-
I
--
I
A
H
I
GTQ
E
F
N
R
---
I
K
V
G
I
G
RPLKG
M
T
V
I
N
H
V
M
G
Q
F
N
T
E
D
N
-
I
A
I
S
L
T
L
D
R
V
V
N
A
V
K
F
Y
L
Q
E
N
--
D
----
F
E
K
T
M
Q
K
F
N
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
61.24
10%
-144
* C5 *
4G4S
-
POC2_YEAST
P:
[3-269]
------------------------------------------------------------------------------------
M
S
C
L
V
L
P
L
V
S
V
G
N
---------
I
P
Q
L
S
I
-
D
W
L
L
----
N
S
Q
A
N
E
W
E
-----
Y
L
E
A
L
DSKYLV
E
F
V
G
P
LDRPEDGSDSLYKDADMKYS
S
A
-------
L
E
-
V
F
Y
N
-----
K
--------
K
R
G
L
-
F
A
I
Q
Q
R
--
T
P
L
V
S
V
N
Y
L
--
N
-
N
--
F
I
V
E
---
I
I
L
P
---
F
L
S
K
Y
N
-----
I
S
E
I
C
I
W
D
S
L
Y
A
M
V
D
Q
-
P
I
--
F
K
I
L
F
Q
S
I
K
Y
C
S
C
L
A
N
E
G
D
N
----
S
L
D
S
Q
Q
F
L
Q
W
I
I
SQV
K
F
V
R
P
I
S
W
Q
G
A
YGMAD
A
R
D
K
F
V
D
L
YN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
59.12
19%
-52
* C4 *
1HSA
1
1B27_HUMAN
A:
[1-178]
------------------------------------------------------------------------------------
G
S
H
S
M
R
Y
F
H
T
S
V
S
R
P
GRGE
P
R
F
I
T
V
G
Y
V
D
D
T
L
F
----
V
R
F
D
S
D
A
A
SPREE
P
R
A
P
W
-------------------------------
I
E
-------
Q
E
-
G
P
E
Y
-----
W
--------
D
R
E
T
-
Q
I
C
K
A
K
--
A
Q
T
D
R
E
D
L
R
--
T
-
L
--
L
R
Y
Y
---
N
Q
S
E
A
G
S
H
T
L
Q
N
M
-----
Y
G
C
D
V
G
P
D
G
R
L
L
R
G
Y
H
-
Q
D
--
A
Y
-
D
G
K
D
Y
I
A
L
N
E
D
L
S
S
W
T
A
AD
T
A
A
Q
I
T
Q
R
K
W
E
A
A
R
V
A
E
Q
L
R
A
Y
L
E
G
E
C
V
E
W
L
R
R
Y
L
E
N
G
KET----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.01
26%
-
- C3 -
3JCR
-
?
J:
[107-182]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-------
N
I
-
I
H
K
F
-----
I
--------
R
D
K
----
Y
S
K
R
--
F
P
E
L
E
S
L
V
P
--
N
-
A
--
L
D
Y
I
R--
T
V
K
E
---
L
G
N
S
L
D
--------------
K
C
K
N
N
E
N
-
L
Q
--
Q
I
L
T
N
A
T
I
M
V
V
S
V
T
A
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
54.69
12%
-160
- C5 -
4Q37
-
?
A:
[1-120]
------------------------------------------------------------------------------------
M
Y
I
L
F
-
R
E
M
K
N
N
W
---------
Y
S
L
A
A
L
-
L
S
T
I
----
Y
S
R
H
L
D
V
E
-----
A
R
P
V
K
-------------------------------
F
E
-------
E
I
-
K
K
F
P
-----
P
--------
E
K
T
I
-
V
A
Y
S
F
M
--
S
F
D
L
D
T
V
R
E
--
E
-
V
--
K
T
L
K
---
E
R
-----------------
G
Y
T
L
I
A
G
G
P
H
V
T
A
D
P
-
E
G
--
C
L
R
M
G
F
D
H
V
F
T
G
D
G
E
E
N
I
L
K
----
F
L
M
G
E
R
K
K
I
FDG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.02
40%
-132
- C3 -
3N2N
1
ANTR1_HUMAN
F:
[118-159]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
--
E
-
D
--
L
F
F
Y
---
S
E
R
E
---
A
N
R
S
R
D
-----
L
G
A
I
V
Y
A
V
G
V
K
D
F
N
E
T
Q
L
A
--
R
I
A
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.54
36%
-188
- C1 -
1NIO
2
RIPB_LUFAE
A:
[45-93]
-----------------------------------------------------------------------------------------------------------
A
S
R
Y
I
-
L
M
Q
L
----
S
N
Y
D
A
K
A
I
-----
T
M
A
I
D
-------------------------------
V
T
-------
N
V
Y
I
M
G
Y
-----
L
--------
V
N
S
T
S
Y
F
F
N
E
S
--
D
A
K
L
A
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
46.17
21%
-180
- C3 -
1PGY
-
A:
[1-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
V
D
--
E
-
V
--
K
D
M
E
---
I
A
R
L
---
M
S
L
G
L
S
-----
I
E
E
A
T
E
F
Y
E
N
D
V
T
Y
E
R
-
Y
L
--
E
I
L
K
S
K
Q
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
34.84
39%
214
- C3 -
3JB9
-
SPP42_SCHPO
A:
[473-514]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
L
K
S
H
-----
V
--------
M
N
K
L
-
H
M
A
H
P
K
--
S
H
T
N
R
S
L
L
R
--
Q
-
L
K
N
T
K
F
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
33.67
13%
-201
- C3 -
2L8S
-
A:
[12-42]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
L
S
--
A
F
A
G
L
L
L
L
M
L
L
I
L
A
L
W
K
I
G
F
----
F
K
R
P
L
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
33.17
23%
-119
- C3 -
2M3E
-
ITAL_HUMAN
A:
[1069-1098]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
L
S
--
G
I
G
G
L
L
L
L
L
L
I
F
I
V
L
Y
K
V
G
F
----
F
K
R
N
L
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
31.19
18%
-226
- C3 -
4B19
-
?
A:
[6-27]
-----------------------------------------------------------------------------------------------------------------------------
H
I
I
A
-----
P
V
I
S
G
-------------------------------
C
A
-------
I
A
-
F
F
S
Y
-----
W
--------
L
S
R
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
29.81
5%
-71
- C3 -
2KV5
-
?
A:
[7-28]
-----------------------------------------------------------------------------------------------------------------------------
L
V
I
A
-----
P
I
F
V
G
-------------------------------
L
V
-------
L
E
-
M
I
S
R
-----
V
--------
L
D
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
28.43
18%
-413
- C3 -
1B9U
-
ATPF_ECOLI
A:
[8-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
Q
A
I
A
F
V
L
F
V
L
F
C
M
K
Y
V
----
W
P
P
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.84
19%
-184
- C3 -
2LOR
-
TM141_HUMAN
A:
[32-97]
---------------------------------------------------------------------------------------
M
K
G
V
F
T
F
V
T
G
---------
T
G
M
A
F
G
-
L
Q
M
F
I
Q
R
K
F
P
Y
P
L
Q
W
S
-----
L
L
V
A
V
-------------------------------
V
A
-------
G
S
-
V
V
S
Y
-----
G
V
T
R
V
E
S
E
K
C
N
N
L
-
W
L
F
L
E
T
--
G
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
27.47
11%
-172
- C3 -
2K1A
-
ITA2B_HUMAN
A:
[971-997]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
--
V
L
G
G
L
L
L
L
T
I
L
V
L
A
M
W
K
V
G
F
----
F
K
R
N
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------