@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1689: (2016-03-27 )
MRKMKRLTWDETKITAFQEALVSWYEANKRVLPWRENTEPYRIWVSEIMLQQTKVDTVIPYFNRFMTQFPTMESFVNADEADILKAWEGLGYYSRVRNLQTAMKQVMADFSGEVPTDLTTILSLKGVGPYTAGAILSIAYNQAEPAVDGNVMRVIARVLEIGEDIMKASTRKIFEEVLYQLIDKKNPAAFNQGLMEIGALVCTPTKPMCMLCPLQPFCEAHKNGVETNYPVKIKKVKMKTKELLSIIVISEDGKIAIEKRPENGLLANMWQFPTIEISKKENDEVAKLQFLHNYGLEVLLEDEPIAHIKHVFSHLVWKMDIRVAKLQSAIPNENWYFATEEEMKRLAFPVPYQKMWQAWKDFKGE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADE_A_6(1VRL)
?
[Raw transfer]



ADE_A_2(1WEI)
MUTY_ECOLI
[Raw transfer]



GOL_A_6(1KQJ)
MUTY_ECOLI
[Raw transfer]



GOL_A_7(1KG5)
MUTY_ECOLI
[Raw transfer]



GOL_A_9(1KG6)
MUTY_ECOLI
[Raw transfer]



IMD_A_4(1WEG)
MUTY_ECOLI
[Raw transfer]



IMD_A_4(1MUY)
MUTY_ECOLI
[Raw transfer]



GOL_C_6(4YOQ)
?
[Raw transfer]



IMD_A_7(1MUN)
MUTY_ECOLI
[Raw transfer]



NACID_B_2(3G0Q)
?
[Raw transfer]
-
NACID_D_4(4YPR)
?
[Raw transfer]
-
NACID_B_1(1VRL)
?
[Raw transfer]
-
NACID_F_6(4YPR)
?
[Raw transfer]
-
NACID_B_1(1RRQ)
?
[Raw transfer]
-
NACID_B_1(1RRQ)
?
[Raw transfer]
-
ADE_A_4(1MUD)
MUTY_ECOLI
[Raw transfer]



NACID_B_2(4YOQ)
?
[Raw transfer]
-
NACID_B_2(3FSP)
?
[Raw transfer]
-
EDO_A_3(1WEG)
MUTY_ECOLI
[Raw transfer]



NACID_B_1(1RRS)
?
[Raw transfer]
-
NACID_B_2(3FSP)
?
[Raw transfer]
-
NACID_B_2(4YPH)
?
[Raw transfer]
-
36 HHSearch 96.1847%-109 * C4 *3FSP 11.9 ?
4 PsiBlast_PDB 96.1648%-109 - C4 -3FSP 11.9 ?
6 PsiBlast_PDB 95.2148%-109 - C4 -4YPR 11.9 ?
7 PsiBlast_PDB 94.5048%-110 - C4 -1RRS 11.7 ?
3 PsiBlast_PDB 94.3448%-111 - C4 -4YPH 10.2 ?
2 PsiBlast_PDB 93.7948%-109 - C4 -4YOQ 12.4 ?
59 Fugue 93.4246%-100 - C4 -1RRQ 12.1 ?
8 PsiBlast_PDB 93.1848%-111 - C4 -1VRL 11.9 ?
5 PsiBlast_PDB 92.9348%-105 - C4 -1RRQ 12.0 ?
21 PsiBlast_CBE 92.4948%-103 - C4 -4YPR 13.3 ?
1 PsiBlast_PDB 92.0648%-106 - C4 -3G0Q 12.4 ?
10 PsiBlast_PDB 77.1242%-108 - C4 -1KG5 2.3 MUTY_ECOLI
38 HHSearch 76.7942%-109 - C4 -1KG2 - MUTY_ECOLI -
19 PsiBlast_PDB 76.6441%-105 - C4 -1MUD 5.5 MUTY_ECOLI
22 PsiBlast_CBE 76.5943%-112 - C4 -3N5N - MUTYH_HUMAN -
11 PsiBlast_PDB 76.5242%-107 - C4 -1KG4 - MUTY_ECOLI -
14 PsiBlast_PDB 76.4242%-108 - C4 -1MUY 3.6 MUTY_ECOLI
13 PsiBlast_PDB 76.3742%-105 - C4 -1KG6 2.2 MUTY_ECOLI
12 PsiBlast_PDB 76.3142%-104 - C4 -1WEG 4.0 MUTY_ECOLI
16 PsiBlast_PDB 76.1842%-106 - C4 -1KG3 - MUTY_ECOLI -
20 PsiBlast_PDB 75.7041%-105 - C4 -1MUN 4.0 MUTY_ECOLI
24 PsiBlast_CBE 75.0841%-102 - C4 -1KQJ 2.9 MUTY_ECOLI
18 PsiBlast_PDB 73.7442%-103 - C4 -1WEI 3.8 MUTY_ECOLI