@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1986: (2016-03-30 )
MTKVYYEDAVKNNALEGKTVAVIGYGSQGHAHSQNLRDNGNNVIIGIREGKSAESARNDGFDVYSVSEAADKADVIMILLPDETQGETYENEIKPNLKAGNSLVFAHGFNIHFDVINPPSDVDVFLVAPKGPGHLVRRTFVEGGAVPSLFAIYQDATGNARDTALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGATHLIQAGFETLVEAGYQPELAYFEVLHEMKLIVDLMYEGGMEKMRHSISNTAEYGDYVSGPRVVTADTKKAMKEVLTDIQNGNFAKSFINDNKNGFKEFHRMRKEQQGHQIEKVGAELREMMPFVKPQH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_11(4XDZ)
?
[Raw transfer]



NAD_B_10(4KQX)
?
[Raw transfer]



NAP_A_3(4KQW)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NAI_B_12(4XDY)
?
[Raw transfer]



NAI_A_5(4XDY)
?
[Raw transfer]



HIO_A_8(4XDY)
?
[Raw transfer]



HIO_A_4(4KQX)
?
[Raw transfer]



40E_B_14(4XDZ)
?
[Raw transfer]
1 PsiBlast_PDB 91.9162% -85 - C4 -4TSK 10.2 ?
134 Fugue 89.8555% -91 - C4 -1NP3 - ILVC_PSEAE -
113 HHSearch 89.7055% -91 * C4 *1NP3 - ILVC_PSEAE -
3 PsiBlast_PDB 89.2555% -90 - C4 -1NP3 - ILVC_PSEAE -
21 PsiBlast_CBE 88.9556% -88 - C4 -4XIY - ILVC_AZOVD -
22 PsiBlast_CBE 88.8456% -89 - C4 -4XIY - ILVC_AZOVD -
23 PsiBlast_CBE 87.7256% -88 - C4 -4XIY - ILVC_AZOVD -
5 PsiBlast_PDB 87.3254% -84 - C4 -4KQX - ? -
25 PsiBlast_CBE 86.7154% -84 - C4 -4KQX 7.2 ?
4 PsiBlast_PDB 86.5054% -86 - C4 -4KQW 7.7 ?
6 PsiBlast_PDB 85.6649% -85 - C4 -4XDZ - ? -
27 PsiBlast_CBE 85.1248% -80 - C4 -4XDY 8.6 ?
8 PsiBlast_PDB 84.9548% -80 - C4 -4XDY 8.3 ?
26 PsiBlast_CBE 84.7749% -84 - C4 -4XDZ 11.0 ?
7 PsiBlast_PDB 84.5049% -87 - C4 -4XEH - ? -
24 PsiBlast_CBE 74.5554% -12 - C- -4KQW - ? -
13 PsiBlast_PDB 71.1427% -75 - C4 -1YVE - ILV5_SPIOL -
114 HHSearch 70.9530% -73 - C4 -3FR7 - ILV5_ORYSJ -
14 PsiBlast_PDB 70.5527% -72 - C4 -1QMG - ILV5_SPIOL -
2 PsiBlast_PDB 70.3556% -24 - C- -4XIY - ILVC_AZOVD -