@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu37820: (2016-08-03 )
MTKVLVTGAGGQLGLELCRQLKQAGYEVIALTKKMMNIADQRSVRHSFGHYQPDIVVNSAAFTSVDQCEKELDKAYLINGIGAYYTALESTRIGAQYVHISTDYVFNGKGTQPYREDDPLDPKTIYGKSKRLGEELIRLTTKDSTIIRTSWVYGHGGSNFVETMLKLAETKQELRVVSDQIGSPTYTKDLAEAVIKLFSHPPGIYHVSNSGICSWYEFATAIMEESGLETAILSVTTEEYGNKTPRPAYSVLSHRAIEEAGIRPRHWREALREYLQERSSACD

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(1KC3)
RMLD_SALTY
[Raw transfer]



NAD_A_3(1N2S)
RMLD_SALTY
[Raw transfer]



NAI_A_4(1VL0)
?
[Raw transfer]



NDP_A_4(1KC1)
RMLD_SALTY
[Raw transfer]



NAI_A_4(1VL0)
?
[Raw transfer]



NAD_A_3(1N2S)
RMLD_SALTY
[Raw transfer]



NDP_C_3(2GGS)
?
[Raw transfer]



NDP_C_3(2GGS)
?
[Raw transfer]
1 PsiBlast_PDB 77.2742% -57 - C1 -1VL0 11.0 ?
24 PsiBlast_CBE 75.3941% -61 - C1 -3SC6 - ? -
22 PsiBlast_CBE 75.2141% -59 - C1 -3SC6 - ? -
2 PsiBlast_PDB 75.0441% -55 - C1 -3SC6 - ? -
23 PsiBlast_CBE 74.8641% -61 - C1 -3SC6 - ? -
21 PsiBlast_CBE 74.5441% -59 - C1 -3SC6 - ? -
56 HHSearch 71.5141% -13 - C1 -1VL0 11.1 ?
63 HHSearch 69.3537% -25 - C1 -4WPG - ? -
55 HHSearch 68.3939% -22 - C1 -3SC6 - ? -
3 PsiBlast_PDB 68.2937% -3 - C1 -4WPG - ? -
46 Fugue 62.2932% 3 - C1 -1N2S 10.0 RMLD_SALTY
11 PsiBlast_PDB 61.4628% 5 - C1 -4KTT - MAT2B_HUMAN -
12 PsiBlast_PDB 61.1528% 9 - C1 -4KTV - MAT2B_HUMAN -
10 PsiBlast_PDB 61.0628% 8 - C1 -4NDN - MAT2B_HUMAN -
4 PsiBlast_PDB 59.8035% -13 - C1 -1KBZ - RMLD_SALTY -
6 PsiBlast_PDB 59.6635% -11 - C1 -1KC3 7.9 RMLD_SALTY
9 PsiBlast_PDB 58.7528% 10 - C1 -2YDX - MAT2B_HUMAN -
7 PsiBlast_PDB 58.5635% -13 - C1 -1N2S 10.1 RMLD_SALTY
47 Fugue 58.3528% 25 - C1 -4NDN - MAT2B_HUMAN -
68 HHSearch 58.2232% -8 - C1 -1N2S - RMLD_SALTY -
5 PsiBlast_PDB 57.9235% -12 - C1 -1KC1 9.1 RMLD_SALTY
45 Fugue 54.1832% 25 * C1 *2GGS 11.7 ?
8 PsiBlast_PDB 51.5435% 10 - C1 -2GGS 11.2 ?