@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4715: (2016-02-29 )
MAESRPARRFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFRADGLLSPQRKVDSLAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EPE_G_7(2DOU)
?
[Raw transfer]




EPE_G_7(2DOU)
?
[Raw transfer]




PLP_A_2(2O1B)
?
[Raw transfer]




MES_A_3(3JTX)
?
[Raw transfer]




EDO_A_6(3EZS)
?
[Raw transfer]




21 PsiBlast_CBE 97.32100%-124 - C1 -2X5D - ? -
41 HHSearch 96.45100%-127 - C1 -2X5D - ? -
1 PsiBlast_PDB 96.45100%-127 - C1 -2X5D - ? -
23 PsiBlast_CBE 93.33100%-127 - C1 -2X5D - ? -
22 PsiBlast_CBE 92.66100%-126 - C1 -2X5D - ? -
24 PsiBlast_CBE 62.1535%-111 - C1 -2DOU - ? -
2 PsiBlast_PDB 59.6735%-111 - C1 -2DOU 2.9 ?
43 HHSearch 58.9426%-106 - C1 -1GD9 - ? -
47 HHSearch 58.8734%-110 - C1 -2DOU 2.9 ?
17 PsiBlast_PDB 57.8628% -99 - C1 -2O0R - DAPC_MYCTU -
4 PsiBlast_PDB 56.9429% -99 - C1 -1O4S - AAT_THEMA -
44 HHSearch 56.8929%-100 - C1 -1O4S - AAT_THEMA -
6 PsiBlast_PDB 55.6226%-106 - C1 -1GDE - ? -
9 PsiBlast_PDB 54.8028% -94 - C1 -3JTX 2.2 ?
56 HHSearch 54.6026%-101 - C1 -3EI9 - DAPAT_ARATH -
50 HHSearch 54.5123% -93 - C1 -1YIZ - ? -
55 HHSearch 54.4728%-101 - C1 -3JTX - ? -
3 PsiBlast_PDB 53.5230%-103 - C1 -2O1B 3.9 ?
49 HHSearch 53.4924% -96 - C1 -3E2Y - KAT3_MOUSE -
7 PsiBlast_PDB 53.0926%-105 - C1 -1GD9 - ? -