@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00069_PMYT1_: (2014-08-19 )
MLERPPALAMPMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPRGLSRSLPPPPPAKGSIPISRLFPPRTPGWHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQPRAWGVLWCMAAEALSRGWALWQALLALLCWLWHGLAHPASWLQPLGPPATPPGSPPCSLLLDSSLSSNWDDDSLGPSLSPEAVLARTVGSTSTPRSRCTPRDALDLSDINSEPPRGSFPSFEPRNLLSLFEDTLDPT

Atome Classification :

(7 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]




ANP_B_9(2A19)
E2AK2_HUMAN
[Raw transfer]




P91_A_3(3CQE)

[Raw transfer]




839_A_2(2IN6)

[Raw transfer]




770_A_3(2Z2W)

[Raw transfer]




396_A_3(3BI6)

[Raw transfer]




GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




STU_A_2(3A62)
KS6B1_HUMAN
[Raw transfer]




STU_A_2(3A61)
KS6B1_HUMAN
[Raw transfer]




EDO_A_3(3P1A)
PMYT1_HUMAN
[Raw transfer]




1 PsiBlast_PDB 93.13100%-103 - C1 -3P1A 2.8 PMYT1_HUMAN
3 PsiBlast_PDB 55.7333%-102 - C1 -2IN6 7.6
2 PsiBlast_PDB 55.6933%-102 - C1 -2Z2W 7.7
5 PsiBlast_PDB 55.3733%-106 - C1 -3BI6 8.4
7 PsiBlast_PDB 54.6933%-104 - C1 -3CQE 7.1
18 PsiBlast_PDB 41.6533% -89 - C1 -3A62 5.9 KS6B1_HUMAN
17 PsiBlast_PDB 34.5333% -81 - C1 -3A61 6.6 KS6B1_HUMAN