@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GLP1R_HUMAN: (2016-01-09 )
MAGAPGPLRLALLLLGMVGRAGPRPQGATVSLWETVQKWREYRRQCQRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLYIIYTVGYALSFSALVIASAILLGFRHLHCTRNYIHLNLFASFILRALSVFIKDAALKWMYSTAAQQHQWDGLLSYQDSLSCRLVFLLMQYCVAANYYWLLVEGVYLYTLLAFSVLSEQWIFRLYVSIGWGVPLLFVVPWGIVKYLYEDEGCWTRNSNMNYWLIIRLPILFAIGVNFLIFVRVICIVVSKLKANLMCKTDIKCRLAKSTLTLIPLLGTHEVIFAFVMDEHARGTLRFIKLFTELSFTSFQGLMVAILYCFVNNEVQLEFRKSWERWRLEHLHIQRDSSMKPLKCPTSSLSSGATAGSSMYTATCQASCS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_B_2(3C5T)
GLP1R_HUMAN
[Raw transfer]
-
1 PsiBlast_PDB 85.1554%-160 - C4 -4L6R - C562_ECOLX (first) -
2 PsiBlast_PDB 69.97100% -66 - C5 -3IOL - GLP1R_HUMAN -
4 PsiBlast_PDB 69.63100% -64 - C5 -3C5T 6.5 GLP1R_HUMAN
3 PsiBlast_PDB 69.52100% -61 - C5 -3C59 - GLP1R_HUMAN -
65 Fugue 62.5218%-117 - C2 -4S3Q - ? -
21 PsiBlast_CBE 60.1433%-107 - C4 -4K5Y - CRFR1_HUMAN -
50 HHSearch 58.9915%-133 - C4 -2KS9 - NK1R_HUMAN -
5 PsiBlast_PDB 58.1146% -44 - C5 -4LF3 - GLR_HUMAN -
7 PsiBlast_PDB 57.5941% -45 - C5 -2QKH - GIPR_HUMAN -
6 PsiBlast_PDB 57.3646% -51 - C5 -4ERS - GLR_HUMAN -
64 Fugue 57.0718% -84 - C4 -4K5Y - CRFR1_HUMAN (first) -
38 HHSearch 56.7939% -47 - C5 -2QKH - GIPR_HUMAN -
8 PsiBlast_PDB 54.1441% -32 - C5 -4HJ0 - GIPR_HUMAN -
18 PsiBlast_PDB 53.7136% -29 - C5 -3H3G - -
66 Fugue 53.6411% -77 * C3 *4JKV - C562_ECOLX (first) -
17 PsiBlast_PDB 53.1636% -30 - C5 -3C4M - MALE_ECOLI (first) -
19 PsiBlast_PDB 53.0636% -27 - C5 -3L2J - MALE_ECOLI (first) -
42 HHSearch 53.0011%-138 - C4 -2Z73 - OPSD_TODPA -
13 PsiBlast_PDB 52.3027% -36 - C5 -3N7S - CALRL_HUMAN -
24 PsiBlast_CBE 52.1436% -19 - C5 -3C4M - -