@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-03 )
LTCGQVAGDLAACLPYLQGSGPLGSCCGGVRALLGAAKTPADRKTACTCLKSAANAIKGINLSKAAGLPTACGVNIPYKISPSTDCSTVQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
11 HHSearch 95.7272%-142 - C3 -1T12 - NLTP1_TOBAC -
14 HHSearch 85.2553%-129 - C3 -1SIY - NLTP1_VIGRR -
12 HHSearch 82.1450%-133 - C3 -2ALG 3.9 NLTP1_PRUPE
16 HHSearch 81.9345%-133 - C3 -1BWO 4.3 NLTP1_WHEAT
31 SP3 80.5754%-128 - C3 -1FK5 5.6 NLTP_MAIZE
13 HHSearch 74.9354%-109 - C3 -1AFH - NLTP_MAIZE -
24 HHSearch 55.5527%-129 - C3 -1SM7 - ? -
23 HHSearch 54.9524%-168 - C3 -1BEA - ITRF_MAIZE -
7 Fugue 54.6227% -95 - C3 -1S6D - 2SS8_HELAN -
21 HHSearch 48.2319%-141 - C3 -1B1U - IAAT_ELECO -
28 HHSearch 45.3025%-116 - C3 -1S6D - 2SS8_HELAN -
17 HHSearch 44.2025% -95 - C3 -2RKN - DIRL1_ARATH -
2 Fugue 43.9626% -81 - C3 -2RKN - DIRL1_ARATH -
26 HHSearch 42.8427% -89 - C3 -1PSY - 2SS_RICCO -
4 Fugue 40.7428%-102 - C3 -1L6H - NLTPX_ORYSJ -
19 HHSearch 38.8234% -64 - C3 -1N89 - NLT2G_WHEAT -
6 Fugue 36.7013% -79 - C3 -1W2Q - CONG_ARAHY -
25 HHSearch 35.1020%-100 - C3 -3OB4 - ? -
8 Fugue 33.2116% -45 - C3 -4HLB - ? -
18 HHSearch 32.6530% -84 - C3 -1L6H - NLTPX_ORYSJ -


User Run . : Multi Template Modeling Result:

(4 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
35 94.83100%-139 - C- -M035 - -
41 92.41100%-142 - C- -M041 - -
39 92.05100%-138 - C- -M039 - -
40 89.73100%-148 - C- -M040 - -