@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0182: (2016-03-13 )
MKQRIGAYLIDAFHRAGVDKIFGVPGDFNLAFLDDIISNPNVDWVGNTNELNASYAADGYARLNGLAALVTTFGVGELSAVNGIAGSYAERIPVIAITGAPTRAVEQAGKYVHHSLGEGTFDDYRKMFAHITVAQGYITPENATTEIPRLINTAIAERRPVHLHLPIDVAISEIEIPTPFEVTATKDTDASTYIELLATKLHQAKQPIIITGHEINSFHLHQELEDFVNQTQIPVAQLSLGKGAFNEENPYYMGIYDGKIAEDKIRDYVDNSDLILNIGAKLTDSATAGFSYQFNIDDVVMLNHHNIKIDDVTNDEISLPSLLKQLSNISYTNSATFPAYHRPTSPDYTVGTEPLTQQTYFKMMQNFLKPNDVIIADQGTSFFGAYDLALYKNNTFIGQPLWGSIGYTLPATLGSQLADKDRRNLLLIGDGSLQLTVQAISTMIRQHIKPVLFVINNDGYTVERLIHGMYEPYNEIHMWDYKALPAVFGGKNVEIHDVESSKDLQDTFNAINGHPDVMHFVEVKMSVEDAPKKLIDIAKAFSQQNK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TDP_B_6(1PYD)
PDC1_YEAST
[Raw transfer]



TPP_A_5(1PVD)
PDC1_YEAST
[Raw transfer]



TDP_A_5(1PYD)
PDC1_YEAST
[Raw transfer]



TPP_B_6(1PVD)
PDC1_YEAST
[Raw transfer]



TPP_A_5(1PVD)
PDC1_YEAST
[Raw transfer]



TPP_A_3(1QPB)
PDC1_YEAST
[Raw transfer]



TPP_B_6(1QPB)
PDC1_YEAST
[Raw transfer]



PYM_B_8(1QPB)
PDC1_YEAST
[Raw transfer]
43 HHSearch 97.9038% -87 - C6 -1OVM - DCIP_ENTCL -
22 PsiBlast_CBE 96.8039% -88 - C6 -1OVM - DCIP_ENTCL -
1 PsiBlast_PDB 96.4939% -88 - C6 -1OVM - DCIP_ENTCL -
30 PsiBlast_CBE 95.9239% -83 - C6 -2VK8 - PDC1_YEAST -
39 PsiBlast_CBE 95.5637% -87 - C6 -2VJY - PDC1_KLULA -
32 PsiBlast_CBE 95.4939% -84 - C6 -2VK8 - PDC1_YEAST -
23 PsiBlast_CBE 95.4839% -87 - C6 -1OVM - DCIP_ENTCL -
21 PsiBlast_CBE 95.4039% -86 - C6 -1OVM - DCIP_ENTCL -
35 PsiBlast_CBE 95.3939% -84 - C6 -2VK1 - PDC1_YEAST -
24 PsiBlast_CBE 95.2639% -84 - C6 -2W93 - PDC1_YEAST -
7 PsiBlast_PDB 95.2237% -89 - C6 -2VJY - PDC1_KLULA -
31 PsiBlast_CBE 94.9839% -84 - C6 -2VK8 - PDC1_YEAST -
26 PsiBlast_CBE 94.9539% -84 - C6 -2W93 - PDC1_YEAST -
41 PsiBlast_CBE 94.7137% -85 - C6 -2VJY - PDC1_KLULA -
34 PsiBlast_CBE 94.6539% -84 - C6 -2VK1 - PDC1_YEAST -
29 PsiBlast_CBE 94.6540% -90 - C6 -1PVD 7.0 PDC1_YEAST
5 PsiBlast_PDB 94.6439% -83 - C6 -2VK8 - PDC1_YEAST -
25 PsiBlast_CBE 94.5239% -83 - C6 -2W93 - PDC1_YEAST -
6 PsiBlast_PDB 94.4739% -84 - C6 -2VK1 - PDC1_YEAST -
33 PsiBlast_CBE 94.3239% -84 - C6 -2VK1 - PDC1_YEAST -
2 PsiBlast_PDB 94.1239% -89 - C6 -1QPB 8.2 PDC1_YEAST
4 PsiBlast_PDB 94.0740% -87 - C6 -1PVD 6.7 PDC1_YEAST
27 PsiBlast_CBE 94.0439% -89 - C6 -1QPB 6.5 PDC1_YEAST
28 PsiBlast_CBE 93.1040% -87 - C6 -1PYD 7.1 PDC1_YEAST
3 PsiBlast_PDB 92.8640% -87 - C6 -1PYD 6.8 PDC1_YEAST
67 Fugue 92.1138% -88 - C6 -1PVD 6.7 PDC1_YEAST