@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0640: (2016-03-17 )
MKTRLKFQVDKDLLLAIVVGVCGSLVALAMFFLSGYMVTQSALGAPLYALMILVVTVKLFGFLRAITRYVERLISHKATFTMLRDIRVQFFGKLVNVIPNVYRKLSSSDLISRMISRVEALQNIYLRVYYPPVVIGLTALVTVIVLAFISIGHALLIMVSMLFTLLIVPWLSSKKARTLKKHAANEQARFLNHFYDYKAGMDELRRFNQINHYRDNLMAKLNHFDKLQLKEQRFLTIYDFILNIIAMLSIFGSLVLGLIQINAGQLNIIYMTSIVLMILTLFEQAVPMTNVAYYKADTDQALHDINEVISVPSTNGKKRLNDKYDATNIYEVKDASFKYWNQQTYVLSDINFNVNRGEKIAIVGPSGSGKSTLLQIMAGLYQLDSGSVRFENMDMFEIDDKDKFESLNVLLQSQQLFDGTIRQNLFTDEKDEAVQAIFKQLDLEHLALERQIDLDGHTLSGGEIQRLAITRMLLKDTASTWILDEPTTALDKQNSLKVMDLIEAHAETLIVATHDLTLLSRFETIIVMINGKIVEKGNYQQLLANQGALWNMIQYNA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]



ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]



ATP_D_5(3VX4)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ADP_A_2(3NHB)

[Raw transfer]



ADP_B_2(2FF7)

[Raw transfer]



ADP_A_2(5DGX)
?
[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]
53 HHSearch 84.2622% -99 - C1 -3B60 - MSBA_SALTY -
1 PsiBlast_PDB 82.4524% -85 - C1 -2HYD 4.6 Y1866_STAAM
51 Fugue 81.5422%-113 - C1 -4F4C - PGP1_CAEEL -
44 Fugue 81.4621% -94 - C1 -3B60 - MSBA_SALTY -
55 HHSearch 80.7819%-102 - C1 -3ZDQ - ABCBA_HUMAN -
2 PsiBlast_PDB 79.9524% -83 - C1 -2ONJ 6.0 Y1866_STAAM
56 HHSearch 78.3619%-112 - C1 -3WMG - ? -
10 PsiBlast_PDB 77.2226% -97 - C1 -4MYC - ATM1_YEAST -
11 PsiBlast_PDB 75.3326% -93 - C1 -4MYH - ATM1_YEAST -
16 PsiBlast_PDB 75.1324% -89 - C1 -4Q4J - Y288_THEMA -
13 PsiBlast_PDB 74.9324% -93 - C1 -4Q4A - Y288_THEMA -
12 PsiBlast_PDB 74.0724% -92 - C1 -3QF4 - Y288_THEMA -
14 PsiBlast_PDB 74.0624% -84 - C1 -4Q4H - Y288_THEMA -
7 PsiBlast_PDB 72.7922% -81 - C1 -3B60 - MSBA_SALTY -
3 PsiBlast_PDB 68.4024% -82 - C1 -4A82 - Y1866_STAAM -
54 HHSearch 63.5521% 20 - C- -3B5X - MSBA_VIBCH -
15 PsiBlast_PDB 60.9826% -84 - C1 -4PL0 6.8 MCJD_ECOLX
21 PsiBlast_CBE 58.9735% -86 - C1 -3VX4 6.4 ?
19 PsiBlast_PDB 58.2233% -78 - C1 -3NHA 6.6
20 PsiBlast_PDB 57.7033% -80 - C1 -3NHB 6.7
18 PsiBlast_PDB 57.5233% -75 - C1 -3NH9 6.3
8 PsiBlast_PDB 57.0435% -79 - C1 -3VX4 6.6 ?
60 HHSearch 56.2031% -81 - C1 -3VX4 7.0 ?
72 HHSearch 55.0430% -89 - C1 -2FF7 6.4
62 HHSearch 53.7030% -85 - C1 -3FVQ 7.1 FBPC_NEIG1
22 PsiBlast_CBE 47.5732% -83 - C1 -5DGX 6.6 ?