@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1246: (2016-03-23 )
MTKRKLRNNWIIVTTMITFVTIFLFCLIIIFFLKDTLHNSELDDAERSSSDINNLFHSKPVKDISALDLNASLGNFQEIIIYDEHNNKLFETSNDNTVRVEPGYEHRYFDRVIKKRYKGIEYLIIKEPITTQDFKGYSLLIHSLENYDNIVKSLYIIALAFGVIATIITATISYVFSTQITKPLVSLSNKMIEIRRDGFQNKLQLNTNYEEIDNLANTFNEMMSQIEESFNQQRQFVEDASHELRTPLQIIQGHLNLIQRWGKKDPAVLEESLNISIEEMNRIIKLVEELLELTKGDVNDISSEAQTVHINDEIRSRIHSLKQLHPDYQFDTDLTSKNLEIKMKPHQFEQLFLIFIDNAIKYDVKNKKIKVKTRLKNKQKIIEITDHGIGIPEEDQDFIFDRFYRVDKSRSRSQGGNGLGLSIAQKIIQLNGGSIKIKSEINKGTTFKIIF

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3SL2)

[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_B_13(4JAV)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]
2 PsiBlast_PDB 82.0535% -67 - C3 -4U7O 9.0 ?
21 PsiBlast_CBE 81.6735% -53 - C3 -4U7O 9.6 ?
1 PsiBlast_PDB 80.4535% -60 - C3 -4U7N - ? -
22 PsiBlast_CBE 79.9032% -55 - C3 -4JAV 8.0 ?
7 PsiBlast_PDB 79.0932% -57 - C3 -4JAV 9.1 ?
23 PsiBlast_CBE 78.9132% -49 - C3 -3DGE 8.4 ?
4 PsiBlast_PDB 78.8133% -55 - C3 -4JAS 9.6 ?
5 PsiBlast_PDB 78.3433% -64 - C3 -4JAU 6.8 ?
6 PsiBlast_PDB 77.5532% -45 - C3 -3DGE 7.1 ?
29 HHSearch 76.7630% -65 - C3 -2C2A 7.4 ?
51 Fugue 76.5122% -33 - C3 -4I5S - ? -
8 PsiBlast_PDB 75.7432% -61 - C3 -2C2A 7.4 ?
3 PsiBlast_PDB 69.2034% -45 - C3 -4I5S - ? -
19 PsiBlast_PDB 67.2025% -47 - C3 -3D36 - ? -
14 PsiBlast_PDB 66.4624% -34 - C3 -4BIV - CPXA_ECOLI -
32 HHSearch 66.3326% -61 - C3 -3A0R - ? -
10 PsiBlast_PDB 65.6726% -32 - C3 -4BIW - CPXA_ECOLI -
28 HHSearch 64.8118% -60 - C3 -2Q8G - PDK1_HUMAN -
11 PsiBlast_PDB 64.1326% -47 - C3 -4BIX - CPXA_ECOLI -
20 PsiBlast_PDB 63.3325% -23 - C3 -4KP4 - ENVZ_ECOLI -
9 PsiBlast_PDB 60.7935% -56 - C3 -3SL2 7.9
37 HHSearch 53.4237% -57 - C3 -3SL2 7.9