@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0275: (2015-12-14 )
MFNYEELFQTYKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLANLGSGADCVSIGEIQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLDPITEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNSLQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPCGGREISPCDVVGPVCESSDTFLKDANLPELEPGDKLAIEKVGAYGSSMASQYNSRPKLLELALEDHKIRVIRKREALEDLWRLEIEGLEGV

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LYS_A_3(3C5Q)
DCDA_HELPX
[Raw transfer]




PLP_A_2(2QGH)
DCDA_HELPX
[Raw transfer]




PLP_A_2(2QGH)
DCDA_HELPX
[Raw transfer]




LYS_A_3(1KO0)
DCDA_ECOLI
[Raw transfer]




PLP_A_2(3C5Q)
DCDA_HELPX
[Raw transfer]




PLP_A_2(2YXX)
DCDA_THEMA
[Raw transfer]




PLP_A_2(2YXX)
DCDA_THEMA
[Raw transfer]




MES_A_6(1KNW)
DCDA_ECOLI
[Raw transfer]




AZ1_C_3(1TUF)
DCDA_METJA
[Raw transfer]




PLP_A_2(1KO0)
DCDA_ECOLI
[Raw transfer]




PLP_A_5(1KNW)
DCDA_ECOLI
[Raw transfer]




30 HHSearch 97.1197%-110 - C2 -2QGH 8.2 DCDA_HELPX
1 PsiBlast_PDB 96.8896%-110 - C2 -2QGH 8.2 DCDA_HELPX
2 PsiBlast_PDB 96.3596%-108 - C2 -3C5Q 4.8 DCDA_HELPX
35 HHSearch 78.9545%-104 - C2 -2P3E - DCDA_AQUAE -
4 PsiBlast_PDB 78.4845%-102 - C2 -2P3E - DCDA_AQUAE -
21 PsiBlast_CBE 77.9844%-105 - C2 -3N2B - DCDA_VIBCH -
22 PsiBlast_CBE 76.9244%-101 - C2 -3N2B - DCDA_VIBCH -
3 PsiBlast_PDB 76.2644%-106 - C2 -3N2B - DCDA_VIBCH -
36 HHSearch 76.1445%-105 - C2 -3N2B - DCDA_VIBCH -
23 PsiBlast_CBE 75.9544%-108 - C2 -3N2B - DCDA_VIBCH -
33 HHSearch 75.3942% -96 - C2 -3VAB - ? -
5 PsiBlast_PDB 74.5143% -95 - C2 -3VAB - ? -
24 PsiBlast_CBE 74.2143% -94 - C2 -3VAB - ? -
7 PsiBlast_PDB 73.8939% -95 - C2 -1TUF 2.8 DCDA_METJA
25 PsiBlast_CBE 73.5440% -95 - C2 -1TWI - DCDA_METJA -
26 PsiBlast_CBE 72.2140% -96 - C2 -1TWI - DCDA_METJA -
6 PsiBlast_PDB 72.1940% -93 - C2 -1TWI - DCDA_METJA -
27 PsiBlast_CBE 72.0240% -93 - C2 -1TWI - DCDA_METJA -
31 HHSearch 70.3040% -87 - C2 -1TWI - DCDA_METJA -
34 HHSearch 67.2134% -89 - C2 -1KNW 4.9 DCDA_ECOLI
8 PsiBlast_PDB 65.8737% -83 - C2 -2YXX 3.2 DCDA_THEMA
28 HHSearch 64.8237% -81 - C2 -2YXX 3.2 DCDA_THEMA
9 PsiBlast_PDB 62.9130% -83 - C2 -1KNW 2.1 DCDA_ECOLI
10 PsiBlast_PDB 62.7130% -82 - C2 -1KO0 3.8 DCDA_ECOLI