@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0769: (2015-12-18 )
MITLKQALSLSQDELETLKNEIDAKVRASDLNAYIKAPSLNGASAKGVPILIKDNISVKGWEITCSSKILEGYVAPYHASAIENLHQNGMAGFGLSNMDEFAMGSTTESSCYGITKNPRDKNIVPGGSSGGSAAAVAGGLTVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGVIAYRSSFDQIRPITQNVEDASILFDAISGYDSKDSTSANLKPTHTFINLIRDKRFKIAILRDHINDASNEVQLAYENTIKALKEMGHEVVEKKMLDSHYQISIYYIISMAEASSNLARFDGVRYGRRAQNVKDLKELYLKSRSEGFGDEVKRRIMLGNFVLSSGYYDAYYLKAQQMRLMIKEQYNKIFEEVDLIFTPVAPTTAYLFNYHASPLEMYLSDIYTIGANLSGLPALSLPVAKDPLGLPIGMQFIAKAFDEQSLLDVSYALEQELDLKLD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASN_A_5(2DQN)
GATA_STAAM
[Raw transfer]



GLN_A_5(2F2A)
GATA_STAAM
[Raw transfer]



GLN_A_4(4N0I)
GATA_YEAST
[Raw transfer]
11 PsiBlast_PDB 96.5243% -61 - C6 -4WJ3 - GATA_PSEAE -
115 HHSearch 94.3048% -58 - C6 -3IP4 - GATA_STAAM -
9 PsiBlast_PDB 94.0649% -62 - C6 -2F2A 3.3 GATA_STAAM
4 PsiBlast_PDB 93.8649% -61 - C6 -2DF4 - GATA_STAAM -
5 PsiBlast_PDB 93.7249% -61 - C6 -2DQN 3.7 GATA_STAAM
8 PsiBlast_PDB 93.6149% -63 - C6 -3IP4 - GATA_STAAM -
6 PsiBlast_PDB 93.3649% -61 - C6 -2G5H - GATA_STAAM -
3 PsiBlast_PDB 93.0953% -66 - C6 -3H0R - GATA_AQUAE -
117 HHSearch 93.0744% -62 - C6 -3KFU - GATA_THET8 -
27 PsiBlast_CBE 92.7653% -67 - C6 -3H0R - GATA_AQUAE -
116 HHSearch 92.7150% -57 - C6 -3H0L - GATA_AQUAE -
34 PsiBlast_CBE 92.6853% -68 - C6 -3H0M - GATA_AQUAE -
2 PsiBlast_PDB 92.3353% -67 - C6 -3H0M - GATA_AQUAE -
7 PsiBlast_PDB 92.3249% -59 - C6 -2G5I - GATA_STAAM -
12 PsiBlast_PDB 92.0944% -68 - C6 -2GI3 - GATA_THEMA -
1 PsiBlast_PDB 91.7653% -67 - C6 -3H0L - GATA_AQUAE -
10 PsiBlast_PDB 91.2444% -63 - C6 -3AL0 - GATA_THEMA -
13 PsiBlast_PDB 90.9245% -67 - C6 -3KFU - GATA_THET8 -
118 HHSearch 87.4246% -65 - C6 -2GI3 - GATA_THEMA -
15 PsiBlast_PDB 82.6335% -60 - C6 -4N0I 3.7 GATA_YEAST