@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0261: (2016-03-13 )
MTEVKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIPKEERTKDLELDVSKAEIEAIIAGKVEGRFPKRDGVDFYHHYKEDIALFAEMGFKTFRLSLNWARIFPNGDDKEPNEKGLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGWADRRVIGFFTNYAETVFKRYKNKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPLELSYQAGHHQFVASALATKLAHEIIPGSQVGCMLARMATYPATNNPDDILKAQYENQQNLFFTDVHARGEYPSFMNRFFQENDIHIVKEVGDDEILKAHTVDFISFSYYMSLSATASPEGDRSAGNLMGGVKNEYLESSDWGWQIDPKGLRWTLNDLYSRYELPLFIVENGLGAYDTVEEDGKIHDDYRIDYLRKHIEQMKEAIADGVDLMGYTSWGPIDLVSASTSEMSKRYGFIYVDQDDWGKGTLERSRKDSFFWYKKVIETNGEDLD

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BG6_B_7(4F66)
?
[Raw transfer]



BG6_A_3(4F66)
?
[Raw transfer]



1FT_B_3(4IPN)
?
[Raw transfer]



6GB_B_5(4GPN)
?
[Raw transfer]



P53_A_2(4F79)
?
[Raw transfer]



6GB_A_3(4GPN)
?
[Raw transfer]



NOJ_A_3(1OIM)
BGLA_THEMA
[Raw transfer]



CTS_B_6(2CBU)
BGLA_THEMA
[Raw transfer]



IFL_A_3(1UZ1)
BGLA_THEMA
[Raw transfer]



CGB_A_3(2CBV)
BGLA_THEMA
[Raw transfer]



NOY_A_4(2J75)
BGLA_THEMA
[Raw transfer]



NOJ_B_4(1OIM)
BGLA_THEMA
[Raw transfer]



1FT_E_4(4IPN)
?
[Raw transfer]



GOL_A_3(4IPL)
?
[Raw transfer]



CTS_A_3(2CBU)
BGLA_THEMA
[Raw transfer]



CGB_B_5(2CBV)
BGLA_THEMA
[Raw transfer]



YLL_B_6(2JAL)
BGLA_THEMA
[Raw transfer]



G2F_A_3(1OIN)
BGLA_THEMA
[Raw transfer]



G2F_B_4(1OIN)
BGLA_THEMA
[Raw transfer]



BGC_A_2(3QOM)
?
[Raw transfer]
21 PsiBlast_CBE 92.9754% -67 - C1 -4IPN 3.4 ?
1 PsiBlast_PDB 92.4254% -70 - C1 -4IPL 2.7 ?
22 PsiBlast_CBE 92.3752% -76 - C1 -2XHY - BGLA_ECOLI -
100 HHSearch 92.3554% -72 - C1 -2XHY - BGLA_ECOLI -
2 PsiBlast_PDB 91.9954% -73 - C1 -4IPN 4.1 ?
3 PsiBlast_PDB 91.7552% -74 - C1 -2XHY - BGLA_ECOLI -
8 PsiBlast_PDB 91.5949% -69 - C1 -3QOM 2.8 ?
23 PsiBlast_CBE 91.1652% -73 - C1 -2XHY - BGLA_ECOLI -
24 PsiBlast_CBE 91.0252% -75 - C1 -2XHY - BGLA_ECOLI -
9 PsiBlast_PDB 89.9049% -70 - C1 -4GZE - ? -
26 PsiBlast_CBE 89.5251% -70 - C1 -4GPN 6.1 ?
25 PsiBlast_CBE 89.1251% -68 - C1 -4F66 5.0 ?
4 PsiBlast_PDB 88.8851% -67 - C1 -4F66 5.5 ?
5 PsiBlast_PDB 88.1351% -68 - C1 -4F79 5.6 ?
6 PsiBlast_PDB 87.8451% -67 - C1 -4GPN 4.6 ?
7 PsiBlast_PDB 87.1449% -66 - C1 -3PN8 - ? -
73 PsiBlast_CBE 78.0033% -63 - C1 -4PTX - ? -
75 PsiBlast_CBE 77.8333% -66 - C1 -4PTW - ? -
84 PsiBlast_CBE 77.8231% -59 - C1 -4HZ8 - ? -
64 PsiBlast_CBE 77.1533% -63 - C1 -1TR1 - BGLA_PAEPO -
55 PsiBlast_CBE 75.5131% -61 - C1 -2CBV 4.5 BGLA_THEMA
56 PsiBlast_CBE 75.1731% -62 - C1 -2CBU 3.4 BGLA_THEMA
12 PsiBlast_PDB 75.0331% -61 - C1 -1OIN 3.6 BGLA_THEMA
15 PsiBlast_PDB 74.2431% -63 - C1 -2CBU 3.7 BGLA_THEMA
60 PsiBlast_CBE 74.1031% -61 - C1 -1OIM 3.0 BGLA_THEMA
59 PsiBlast_CBE 74.1031% -63 - C1 -1OIN 3.5 BGLA_THEMA
16 PsiBlast_PDB 74.0731% -61 - C1 -2CBV 4.3 BGLA_THEMA
14 PsiBlast_PDB 73.9131% -62 - C1 -1UZ1 3.1 BGLA_THEMA
52 PsiBlast_CBE 73.7131% -61 - C1 -2J75 4.4 BGLA_THEMA
41 PsiBlast_CBE 73.6431% -62 - C1 -2JAL 3.1 BGLA_THEMA
11 PsiBlast_PDB 73.4431% -62 - C1 -1OIM 3.3 BGLA_THEMA