@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1006: (2016-03-20 )
MTKSIRPELRDIQVSGIRTFNTRVTGIPDMIRLTLGEPDFPTPDHVKQAAISAIEENFTNYTPNAGMPELLEAASIYFHEKYDLSYSNKEIIVTVGATEAISVALQTILEPGDEVILPDPIYPGYEPLITLNKAHPVKVDTTETNFKLTPEQLKAHITPKTKALIIPYPSNPTGVTLSKDELSALAEVLKETGIFVIADEIYSELTYHEEHVSIAPMLRDQTIVINGLSKSHAMIGWRIGFLLAPEILTQEMLKIHQYSVTCASSISQKAALEAITNGKDDAFQMRTEYKTRANFTQDRLEKMGFTVIPPDGAFYFFVKLPDEIAENSFDWAVKLAEEAKVAVVPGNAFSEKGDRYFRLSYATSFNNLAEALDRMAQFVEK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]



PLP_F_6(1GDE)
?
[Raw transfer]



GLU_D_4(1GDE)
?
[Raw transfer]



PLP_B_4(1GD9)
?
[Raw transfer]



PLP_B_4(1DJU)
?
[Raw transfer]



PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



PLP_B_4(1J32)
?
[Raw transfer]



PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_3(1J32)
?
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]



PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]



MES_A_3(3JTX)
?
[Raw transfer]



GOL_A_6(2O0R)
DAPC_MYCTU
[Raw transfer]



AKG_A_4(3AOW)
?
[Raw transfer]



EDO_A_11(1VP4)
?
[Raw transfer]
47 HHSearch 94.7837%-102 - C1 -1O4S 4.4 AAT_THEMA
22 PsiBlast_CBE 93.7138% -96 - C1 -1GD9 4.0 ?
21 PsiBlast_CBE 92.7938% -94 - C1 -1GDE 5.1 ?
5 PsiBlast_PDB 92.4938%-107 - C1 -1O4S - AAT_THEMA -
45 HHSearch 91.4338% -95 - C1 -1GD9 4.1 ?
25 PsiBlast_CBE 91.3938%-106 - C1 -1O4S 3.7 AAT_THEMA
2 PsiBlast_PDB 91.3738% -95 - C1 -1GD9 - ? -
24 PsiBlast_CBE 89.9037%-103 - C1 -1J32 4.6 ?
1 PsiBlast_PDB 89.8938% -94 - C1 -1GDE - ? -
48 HHSearch 89.4036% -90 - C1 -1J32 4.0 ?
40 PsiBlast_CBE 89.2038% -99 - C1 -1BKG - AAT_THET8 -
39 PsiBlast_CBE 88.9338% -99 - C1 -1BKG - AAT_THET8 -
23 PsiBlast_CBE 88.7038%-104 - C1 -1DJU 4.2 ?
68 Fugue 88.6338%-101 - C1 -1BJW - AAT_THET8 -
4 PsiBlast_PDB 88.5937% -98 - C1 -1J32 - ? -
11 PsiBlast_PDB 88.5038% -99 - C1 -1BKG - AAT_THET8 -
12 PsiBlast_PDB 88.1438%-101 - C1 -1BJW - AAT_THET8 -
3 PsiBlast_PDB 88.0738%-100 - C1 -1DJU - ? -
41 PsiBlast_CBE 87.9038% -99 - C1 -1BKG - AAT_THET8 -
10 PsiBlast_PDB 87.4138% -99 - C1 -1B5O 4.3 AAT_THET8
26 PsiBlast_CBE 87.1538%-100 - C1 -1GCK 6.0 AAT_THET8
54 HHSearch 86.6039%-100 * C1 *1B5P 4.4 AAT_THET8
38 PsiBlast_CBE 86.4238% -98 - C1 -1B5O 4.6 AAT_THET8
27 PsiBlast_CBE 85.7238% -99 - C1 -1B5P 4.3 AAT_THET8
20 PsiBlast_PDB 81.2230% -98 - C1 -2O0R 2.8 DAPC_MYCTU