@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1116: (2016-03-21 )
MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEINGFSVVEFLSSLKVEKAIIELDEEVRILDLQEHSGFESSGSFTNTFKKYTGSSPRKYKTEMNDIFYDMKRFENDNKDKSIAHFQENNDSFCNVTIDVPDEFEKGIIFIGLFRTLIPNHMPISGLATKNLIGNQLKNIPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLSFPKCSGNHYAIKLRKPIPEDPPILANVGKILISCLKNTI

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_2(1BL0)
MARA_ECOLI
[Raw transfer]

-

21 HHSearch 65.4923% -35 - C3 -3OOU - ? -
9 PsiBlast_PDB 63.5124% -35 - C3 -3OOU - ? -
23 HHSearch 62.4524% -46 - C3 -3LSG - ? -
43 Fugue 61.5020% -3 - C2 -3J6V - RT05_BOVIN -
17 HHSearch 61.1817% -40 - C3 -3MN2 - ? -
4 PsiBlast_PDB 60.6823% -50 - C3 -2K9S - -
18 HHSearch 60.5121% -36 - C3 -3W6V - ? -
16 HHSearch 60.1623% -45 - C3 -2K9S - -
38 Fugue 60.1212% -15 - C3 -1D5Y - ROB_ECOLI -
2 PsiBlast_PDB 58.7934% -37 - C3 -1BL0 - MARA_ECOLI -
35 Fugue 58.7127% -22 * C3 *1BL0 - MARA_ECOLI -
3 PsiBlast_PDB 58.6634% -36 - C3 -1XS9 - MARA_ECOLI -
5 PsiBlast_PDB 57.9721% -25 - C3 -3OIO - ? -
24 HHSearch 57.9324% -33 - C3 -1D5Y - ROB_ECOLI -
19 HHSearch 57.9120% -38 - C3 -3OIO - ? -
20 HHSearch 57.6129% -25 - C3 -1BL0 - MARA_ECOLI -
6 PsiBlast_PDB 55.0025% -20 - C3 -3W6V - ? -
1 PsiBlast_PDB 52.9728% -14 - C3 -1D5Y - ROB_ECOLI -
15 HHSearch 51.3616% -32 - C3 -3GBG - TCPN_VIBC3 -
8 PsiBlast_PDB 49.0822% -13 - C3 -4FE7 - XYLR_ECOLI -
39 Fugue 40.1031% 15 - C3 -1BL0 3.5 MARA_ECOLI