@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1892: (2016-03-29 )
MADKPQTRSQYRNKQSGGSKKKSQKRGKRVAANIFKTIFFVGLFLAFFGIAAGATVFYDYAKDAPKLTDSKLRDPLSSKLLDKDGKVFAEVGTERREYIEYKDIPETLKNAILTTEDARFYEHDGIDPIRLGGAVIANLTDGFGAEGASTLSQQIIKMSYLDYTNKTLARKAQEAWLALQLEEKYSKNDILEIYVNKVYMSDRVHGMQTASEHYFGKNVKDLTLAQTALLAGMPQSPNNYNPYEHPEAAKKRRDQVLTNMYTHDKITKEEMTEAQKTPITTGLRSKKDREDKIYKYDSYVTQVLSEIPKEYDVYRDGLTIHTALDRDAQEYTEKMLNTNEIVNFTDDEMQAGIVLQDTKTGRVQAIGGGRKQKVTRGYNYATQVKRSVGSTMKPIADYGPAFEYLDWSTAHILEDEPYTYSGGTPINNWDFGYKGPISVRQALYQSRNIPALKTLQAVGLDKSEEFVNKLGITYDEGQNVESNAIGANSSNPMQMAGAYAAFGNKGIYNKPHTVTKIVLSDGQTEIDTEPQSTVAMKESTAYMVSDVLKDVLSIGTGTSAAVPGVPAAGKTGTTNIPPEFTSKYYYPSGAARDSWFAGYTTNYSIAVWTGYDDKKKYVSASEQKIAQRMFSKLMAHASAGKTTADFKMPSNVVSVPILKGSNPIARAAQGTSSDKVSYELFLSGTAPTKTASTPEDEKKKAEEAAKKKKAEEDKKKTDEEKKKEEEAKKKAEEEAKKKAEEEAKNLTAPAGLRASYNAGSKQINVSWSAVEGATYEVTVNGSTTTVSSTSVSVSGGNPGDTVSINVVAVKDGKRSPASSTTVKIPDS

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMG_B_13(2ZC5)
?
[Raw transfer]



TEB_B_13(2ZC6)
?
[Raw transfer]



BMG_D_14(2ZC5)
?
[Raw transfer]



PCZ_B_12(2C5W)
?
[Raw transfer]



TEB_D_14(2ZC6)
?
[Raw transfer]



PNM_A_3(3UDI)
?
[Raw transfer]



MES_F_4(2V2F)
?
[Raw transfer]



MES_F_4(2V2F)
?
[Raw transfer]



EDO_B_11(2C5W)
?
[Raw transfer]



EDO_B_10(2C5W)
?
[Raw transfer]
51 HHSearch 84.8940% -40 - C1 -2OLV - ? -
2 PsiBlast_PDB 84.7438% -43 - C1 -2OLV - ? -
22 PsiBlast_CBE 84.4139% -44 - C1 -3DWK - ? -
23 PsiBlast_CBE 84.2239% -45 - C1 -3DWK - ? -
1 PsiBlast_PDB 83.7438% -46 - C1 -2OLU - ? -
21 PsiBlast_CBE 81.0339% -41 * C1 *3DWK - ? -
79 Fugue 73.1828% -29 - C1 -3UDI 3.4 ?
4 PsiBlast_PDB 68.7436% -34 - C1 -3ZGA - ? -
3 PsiBlast_PDB 68.7036% -36 - C1 -3ZG8 - ? -
5 PsiBlast_PDB 68.6136% -36 - C1 -3ZG9 - ? -
52 HHSearch 68.3836% -34 - C1 -3ZG9 - ? -
7 PsiBlast_PDB 64.8840% -42 - C1 -2ZC5 5.3 ?
12 PsiBlast_PDB 64.7630% -31 - C3 -3FWL - PBPB_ECOLI -
25 PsiBlast_CBE 64.7140% -43 - C1 -2ZC5 5.7 ?
24 PsiBlast_CBE 64.5840% -42 - C1 -2ZC6 3.2 ?
10 PsiBlast_PDB 64.2040% -40 - C1 -2C6W - ? -
8 PsiBlast_PDB 64.2040% -42 - C1 -2ZC6 3.2 ?
9 PsiBlast_PDB 63.7440% -42 - C1 -2C5W 3.4 ?
6 PsiBlast_PDB 62.6735% -22 - C- -3ZG7 - ? -
59 HHSearch 61.8536% -34 - C1 -2V2F 2.6 ?
11 PsiBlast_PDB 61.3437% -35 - C1 -2V2F 2.6 ?