@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1937: (2016-03-30 )
MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYNSAEWLGKEFNIIDTGGIDLSDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQVAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GCP_A_2(4DCV)
DER_BACSU
[Raw transfer]




GDP_A_2(4DCU)
DER_BACSU
[Raw transfer]




GDP_A_2(4DCS)
DER_BACSU
[Raw transfer]




GDP_A_3(2HJG)
DER_BACSU
[Raw transfer]




GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]




GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]




GDP_B_18(2GJ9)
MNME_ECOLI
[Raw transfer]




GDP_A_9(2GJA)
MNME_ECOLI
[Raw transfer]




GDP_A_17(2GJ9)
MNME_ECOLI
[Raw transfer]




GDP_D_20(2GJ9)

[Raw transfer]




GDP_C_19(2GJ9)
MNME_ECOLI
[Raw transfer]




GDP_B_10(2GJA)

[Raw transfer]




1 PsiBlast_PDB 97.7572%-125 - C1 -4DCS 7.6 DER_BACSU
2 PsiBlast_PDB 97.6072%-123 - C1 -4DCU 7.6 DER_BACSU
4 PsiBlast_PDB 97.1971%-123 - C1 -2HJG 7.3 DER_BACSU
3 PsiBlast_PDB 97.1772%-124 - C1 -4DCV 7.7 DER_BACSU
55 HHSearch 79.2239%-117 - C1 -1MKY - DER_THEMA -
6 PsiBlast_PDB 77.0939%-116 - C1 -1MKY - DER_THEMA -
21 PsiBlast_CBE 64.6481%-112 - C1 -4KYU - DER_BACSU -
7 PsiBlast_PDB 63.3781% -96 - C1 -4KYU - DER_BACSU -
8 PsiBlast_PDB 57.3741% -91 - C1 -2DYK - ? -
22 PsiBlast_CBE 56.9341% -92 - C1 -2DYK - ? -
66 HHSearch 56.7225%-103 - C1 -1MKY - DER_THEMA -
61 HHSearch 56.5641% -83 - C1 -2DYK - ? -
18 PsiBlast_PDB 55.3433% -89 - C1 -3IEV - ERA_AQUAE -
16 PsiBlast_PDB 54.9033% -89 - C1 -3R9W - ERA_AQUAE -
17 PsiBlast_PDB 54.8433% -87 - C1 -3R9X - ERA_AQUAE -
63 HHSearch 54.7235%-114 - C1 -3GEH 6.7 MNME_NOSS1
64 HHSearch 54.6032%-101 - C1 -1XZP - MNME_THEMA -
74 HHSearch 54.2022% -92 - C1 -3PQC - ENGB_THEMA -
47 Fugue 54.1421% -54 - C1 -1XZP - MNME_THEMA -
65 HHSearch 53.6430% -93 - C1 -3IEV - ERA_AQUAE -
9 PsiBlast_PDB 51.4232%-100 - C1 -3GEH 6.7 MNME_NOSS1
20 PsiBlast_PDB 43.0243% -38 - C1 -2GJA 5.5 MNME_ECOLI
25 PsiBlast_CBE 42.8543% -40 - C1 -2GJ9 5.3 MNME_ECOLI
24 PsiBlast_CBE 42.7743% -37 - C1 -2GJ9 5.6
23 PsiBlast_CBE 42.6443% -38 - C1 -2GJA 5.5
19 PsiBlast_PDB 42.0143% -35 - C1 -2GJ9 5.1 MNME_ECOLI
26 PsiBlast_CBE 41.3143% -41 - C1 -2GJ9 5.3 MNME_ECOLI