@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2103: (2016-03-31 )
MSDLFTTIKGQVTGKNVRIVLPEGTDERIVGAAARLQKENIVKPILLGNKAEIEAKAKEIGVSVEGIAIHEPATDPLFDELVAAFVERRKGKATEEAARKMLVDPNYFGTMLVYTGKAEGLVSGAAHSTGDTVRPALQIIKTKPGVSKVAGAMIMVRGEERYLFSDVAINIAPVAADLAENAIVSAETAEIFGIDPRVAMLSFSTKGSAKSDETEKVVEATALAKEKAPELTLDGEFQFDAAFVPTVAEKKAPGSVIKGDANVFIFPSLEAGNIGYKIAQRLGNFEAVGPILQGLNAPVNDLSRGCNTDDVYNLTLITAAQAVNK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_C_3(2AF4)
PTAS_METTE
[Raw transfer]



COA_C_3(2AF4)
PTAS_METTE
[Raw transfer]



COA_D_4(2AF3)
PTAS_METTE
[Raw transfer]



GOL_A_3(1VMI)
EUTD_ECOLI
[Raw transfer]



GOL_A_3(1VMI)
EUTD_ECOLI
[Raw transfer]



GOL_A_2(1VMI)
EUTD_ECOLI
[Raw transfer]



TRS_A_2(4E4R)
PTAS_STAAR
[Raw transfer]



COA_F_6(2AF3)
PTAS_METTE
[Raw transfer]
25 PsiBlast_CBE 99.1672% -94 - C3 -1TD9 - PTAS_BACSU -
34 HHSearch 98.9273% -94 - C3 -1TD9 - PTAS_BACSU -
1 PsiBlast_PDB 98.8272% -94 - C3 -1TD9 - PTAS_BACSU -
23 PsiBlast_CBE 98.6872% -93 - C3 -1TD9 - PTAS_BACSU -
27 PsiBlast_CBE 98.5772% -94 - C3 -1TD9 - PTAS_BACSU -
20 PsiBlast_CBE 98.5472% -92 - C3 -1XCO - PTAS_BACSU -
22 PsiBlast_CBE 98.3772% -92 - C3 -1XCO - PTAS_BACSU -
26 PsiBlast_CBE 98.3072% -92 - C3 -1TD9 - PTAS_BACSU -
21 PsiBlast_CBE 98.2672% -93 - C3 -1XCO - PTAS_BACSU -
2 PsiBlast_PDB 98.2272% -94 - C3 -1XCO - PTAS_BACSU -
19 PsiBlast_CBE 97.7472% -93 - C3 -1XCO - PTAS_BACSU -
18 PsiBlast_CBE 97.7272% -92 - C3 -1XCO - PTAS_BACSU -
3 PsiBlast_PDB 94.3761% -89 - C3 -4E4R 4.0 PTAS_STAAR
33 HHSearch 84.3145% -76 - C3 -2AF4 5.3 PTAS_METTE
35 HHSearch 81.3941% -79 - C3 -1VMI 2.4 EUTD_ECOLI
6 PsiBlast_PDB 80.6646% -75 - C3 -1QZT - PTAS_METTE -
5 PsiBlast_PDB 80.6546% -69 - C3 -2AF4 5.3 PTAS_METTE
30 PsiBlast_CBE 80.4646% -72 - C3 -1QZT - PTAS_METTE -
31 PsiBlast_CBE 80.2046% -76 - C3 -1QZT - PTAS_METTE -
29 PsiBlast_CBE 79.1746% -73 - C3 -1QZT - PTAS_METTE -
7 PsiBlast_PDB 79.1046% -70 - C3 -2AF3 4.6 PTAS_METTE
28 PsiBlast_CBE 78.7046% -71 * C3 *2AF3 5.4 PTAS_METTE
8 PsiBlast_PDB 77.8642% -75 - C3 -1VMI 2.7 EUTD_ECOLI