@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2551: (2016-04-04 )
MAKLSIAYLESLTIKDIYSLAKEHKIAYYSKLTKRELIFALLKSNAEKEGFFFMEGVLEIIPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDRVSGKVRPPKENERYFGLLHVEAVNGENPEVAKERVHFPGLTPLYPDRQIHLETEKYPISTRTIDLIAPIGFGQRGLIVAPPKAGKTVLLKEIANAITTNHPDTELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPENHIKVAELVLERAMRLVEQKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRQLAERRVFPAIDMRRSGTRKEELLLSKERLEQLWKIRKAMPKQGDGLDISERFVRYLKKTDNNEAFYELLQEEMFKK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_H_3(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_H_2(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_H_3(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_H_3(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_M_2(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_G_1(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_J_4(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_G_1(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_4(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_M_2(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_J_4(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_L_6(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_K_5(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_J_1(2HT1)
RHO_ECOLI
[Raw transfer]
-
NACID_L_5(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_J_4(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_5(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_J_3(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_L_6(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_K_5(1XPR)
RHO_ECOLI
[Raw transfer]
-
NACID_M_2(1XPU)
RHO_ECOLI
[Raw transfer]
-
NACID_L_6(1XPO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_4(2HT1)
RHO_ECOLI
[Raw transfer]
-
29 PsiBlast_CBE 94.6555% -99 - C4 -1XPR 5.6 RHO_ECOLI
38 PsiBlast_CBE 93.0755% -98 - C4 -1PVO 6.1 RHO_ECOLI
32 PsiBlast_CBE 92.6155% -92 - C4 -1XPO 3.6 RHO_ECOLI
25 PsiBlast_CBE 92.4655% -94 - C4 -1XPU 4.0 RHO_ECOLI
36 PsiBlast_CBE 92.2255% -97 - C4 -1PVO 7.1 RHO_ECOLI
23 PsiBlast_CBE 92.0555% -92 - C4 -1XPU 6.4 RHO_ECOLI
3 PsiBlast_PDB 92.0055% -97 - C6 -1XPU - RHO_ECOLI -
28 PsiBlast_CBE 91.9855% -93 - C4 -1XPR 6.9 RHO_ECOLI
26 PsiBlast_CBE 91.8355% -93 - C4 -1XPR 4.9 RHO_ECOLI
1 PsiBlast_PDB 91.7055% -97 - C6 -1PVO - RHO_ECOLI -
24 PsiBlast_CBE 91.6655% -91 - C4 -1XPU 4.7 RHO_ECOLI
2 PsiBlast_PDB 91.4555% -92 - C4 -1XPR 4.9 RHO_ECOLI
37 PsiBlast_CBE 91.1455% -96 - C4 -1PVO 6.3 RHO_ECOLI
21 PsiBlast_CBE 91.1355% -96 - C4 -1XPU 6.9 RHO_ECOLI
39 PsiBlast_CBE 91.0255% -95 - C4 -1PVO 6.2 RHO_ECOLI
27 PsiBlast_CBE 90.9155% -96 - C4 -1XPR 5.5 RHO_ECOLI
34 PsiBlast_CBE 90.6155% -99 - C4 -1XPO 5.3 RHO_ECOLI
22 PsiBlast_CBE 90.5955% -91 - C4 -1XPU 6.2 RHO_ECOLI
35 PsiBlast_CBE 90.4855% -90 - C4 -1XPO 5.6 RHO_ECOLI
33 PsiBlast_CBE 90.4355% -96 - C4 -1XPO 5.9 RHO_ECOLI
4 PsiBlast_PDB 90.0955% -92 - C4 -1XPO 4.2 RHO_ECOLI
30 PsiBlast_CBE 90.0655% -96 - C4 -1XPR 6.3 RHO_ECOLI
31 PsiBlast_CBE 88.9555% -90 - C4 -1XPO 4.3 RHO_ECOLI
41 PsiBlast_CBE 74.7655% -92 - C4 -2HT1 5.1 RHO_ECOLI
5 PsiBlast_PDB 74.1155% -93 - C4 -2HT1 4.4 RHO_ECOLI