@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0275: (2015-11-29 )
MTNDFHHITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_2(3TKA)
RSMH_ECOLI
[Raw transfer]




SAM_C_3(1WG8)
RSMH_THET8
[Raw transfer]




SAM_D_4(1WG8)
RSMH_THET8
[Raw transfer]




SAM_D_4(1WG8)
RSMH_THET8
[Raw transfer]




SAM_A_2(3TKA)
RSMH_ECOLI
[Raw transfer]




1 PsiBlast_PDB 94.7141% -65 - C2 -3TKA 9.3 RSMH_ECOLI
31 HHSearch 93.2041% -61 - C2 -3TKA 9.3 RSMH_ECOLI
33 HHSearch 90.6145% -61 * C2 *1WG8 9.9 RSMH_THET8
32 HHSearch 90.0141% -68 - C2 -1M6Y - RSMH_THEMA -
21 PsiBlast_CBE 89.5242% -71 - C2 -1WG8 9.3 RSMH_THET8
3 PsiBlast_PDB 89.3837% -73 - C2 -1M6Y - RSMH_THEMA -
4 PsiBlast_PDB 89.0437% -70 - C2 -1N2X - RSMH_THEMA -
2 PsiBlast_PDB 88.5242% -65 - C2 -1WG8 9.9 RSMH_THET8
56 Fugue 60.5919% -56 - C2 -3EEY - ? -
55 Fugue 53.5717% -63 - C2 -4PON - ? -
51 HHSearch 52.9430% -70 - C2 -3EEY - ? -
35 HHSearch 52.4417% -78 - C2 -2PWY - TRMI_THET2 -
15 PsiBlast_PDB 52.2621% -61 - C2 -1EIZ - RLME_ECOLI -
40 HHSearch 51.6815% -70 - C2 -1I9G - TRMI_MYCTU -
16 PsiBlast_PDB 51.6521% -61 - C2 -1EJ0 - RLME_ECOLI -
41 HHSearch 51.1718% -69 - C2 -3MB5 - TRMI_PYRAB -
48 HHSearch 50.8220% -78 - C2 -2B25 - TR61B_HUMAN -
60 Fugue 50.3615% -31 - C2 -1RI5 - MCES_ENCCU -
34 HHSearch 49.7518% -63 - C2 -1O54 - ? -
9 PsiBlast_PDB 49.2624% -54 - C2 -2YXL - ? -