@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1408: (2015-12-07 )
MAYIWSYLKRYPNWLWLDLLGAMLFVTVILGMPTALAGMIDNGVTKGDRTGVYLWTFIMFIFVVLGIIGRITMAYASSRLTTTMIRDMRNDMYAKLQEYSHHEYEQIGVSSLVTRMTSDTFVLMQFAEMSLRLGLVTPMVMIFSVVMILITSPSLAWLVAVAMPLLVGVVLYVAIKTKPLSERQQTMLDKINQYVRENLTGLRVVRAFARENFQSQKFQVANQRYTDTSTGLFKLTGLTEPLFVQIIIAMIVAIVWFALDPLQRGAIKIGDLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSHRIREVMDMPISINPNAEGVTDTKLKGHLEFDNVTFAYPGETESPVLHDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGKILVDGVDVRDYNLKSLRQKIGFIPQKALLFTGTIGENLKYGKADATIDDLRQAVDISQAKEFIESHQEAFETHLAEGGSNLSGGQKQRLSIARAVVKDPDLYIFDDSFSALDYKTDATLRARLKEVTGDSTVLIVAQRVGTIMDADQIIVLDEGEIVGRGTHAQLIENNAIYREIAESQLKNQNLSEGE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_A_2(2IXG)

[Raw transfer]



ATP_B_6(2PZF)

[Raw transfer]
3 PsiBlast_PDB 92.6636%-121 - C1 -4Q4A - ? -
2 PsiBlast_PDB 92.1736%-121 - C1 -3QF4 - ? -
4 PsiBlast_PDB 91.2336%-118 - C1 -4Q4H - ? -
1 PsiBlast_PDB 89.2536%-116 - C1 -4Q4J - ? -
24 PsiBlast_CBE 78.8031%-108 - C1 -2HYD - Y1866_STAAM -
23 PsiBlast_CBE 78.5131%-108 - C1 -2ONJ - Y1866_STAAM -
5 PsiBlast_PDB 78.2831%-108 - C1 -2HYD - Y1866_STAAM -
6 PsiBlast_PDB 77.3331%-108 - C1 -2ONJ - Y1866_STAAM -
89 HHSearch 76.0124%-107 - C1 -3WMG - ? -
107 Fugue 75.7624%-104 - C1 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 74.8733%-116 - C1 -3QF4 - Y288_THEMA -
21 PsiBlast_CBE 74.7133%-116 - C1 -4Q4A - Y288_THEMA -
19 PsiBlast_PDB 74.1828%-105 - C1 -3WMG - ? -
18 PsiBlast_PDB 73.9628%-106 - C1 -3WMF - ? -
88 HHSearch 73.3025%-105 - C1 -3ZDQ - ABCBA_HUMAN -
11 PsiBlast_PDB 72.5528% -97 - C1 -3B60 - MSBA_SALTY -
86 HHSearch 71.5225% -96 - C1 -3B60 - MSBA_SALTY -
13 PsiBlast_PDB 70.1929%-103 - C1 -4AYX - ABCBA_HUMAN -
14 PsiBlast_PDB 69.8029%-101 - C1 -3ZDQ - ABCBA_HUMAN -
12 PsiBlast_PDB 68.9829%-100 - C1 -4AYT - ABCBA_HUMAN -
94 HHSearch 52.1034% -81 - C1 -2IXE 7.3 TAP1_RAT
69 PsiBlast_CBE 52.0432% -83 - C1 -2IXG 6.8
62 PsiBlast_CBE 51.8432% -81 - C1 -2IXE 7.3 TAP1_RAT
76 PsiBlast_CBE 41.1334% -85 - C1 -2PZF 6.2