@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1785: (2015-12-10 )
MLDKAVMRLSGIHKLLGLLAGLDVLQAIFIIGQAYYLSLSITGLWEGQKLSSQTVYILLFMVSYLGRHVIDYIKNRKLDDFSTAQSSLLRRQLLDKLFDLGPKVVQEQGTGNVVTMALDGVSLVENYLRLVLNKMINMSIIPWIILAYIFYLDIESGAILLIVFPLIIIFMIILGYAAQAKADKQYESYQVLSNHFLDSLRGIDTLKYFGLSKRYGKSIYQTSESFRKATMSTLKIGILSTFALDFFTTLSIAIVAVFLGLRLLNEQIYLLPALTILILSPEYFLPVRDFSSDYHATLDGKNAFQAIQKVLNKTGIKGEQLVIDDWSKESHLDLENIAIAYDQKRVVEDVTLRFRGHQKVALVGVSGSGKSSLINLLSGFLGPDKGSLKVDGREVVNLDQEDWHKQMIYIPQTPYVFEMSLRDNITFYTPNASDEEVIRAIHMVGLDSLLSELPDGLETRIGNGARPLSGGQAQRIALARAFLDQNRRIMVFDEPTAHLDIETELELKEKMLPLMSDRLVIFATHRLHWLNQMDVIVVMEKGRVVEVGSYQELLAKKGYLYQLKHAMGGNNV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3VX4)
?
[Raw transfer]
63 HHSearch 82.6322% -95 - C1 -3B60 - MSBA_SALTY -
84 Fugue 81.4321% -96 - C1 -3B60 - MSBA_SALTY -
2 PsiBlast_PDB 80.2025%-122 - C1 -4Q4A - Y288_THEMA -
3 PsiBlast_PDB 79.4225%-114 - C1 -4Q4H - Y288_THEMA -
64 HHSearch 79.0120%-107 - C1 -3ZDQ - ABCBA_HUMAN -
1 PsiBlast_PDB 78.5625%-120 - C1 -3QF4 - Y288_THEMA -
66 HHSearch 78.1921%-107 - C1 -3WMG - ? -
6 PsiBlast_PDB 77.5525%-108 - C1 -2ONJ - Y1866_STAAM -
5 PsiBlast_PDB 77.3225%-108 - C1 -2HYD - Y1866_STAAM -
4 PsiBlast_PDB 75.7825%-114 - C1 -4Q4J - Y288_THEMA -
12 PsiBlast_PDB 68.7232% -98 - C1 -4M1M - MDR1A_MOUSE -
20 PsiBlast_PDB 68.4632%-105 - C1 -4Q9H - MDR1A_MOUSE -
30 PsiBlast_CBE 68.3332%-107 - C1 -4LSG - MDR1A_MOUSE -
29 PsiBlast_CBE 68.3332%-106 - C1 -4LSG - MDR1A_MOUSE -
17 PsiBlast_PDB 67.8232%-102 - C1 -4KSB - MDR1A_MOUSE -
19 PsiBlast_PDB 67.7732%-103 - C1 -4KSD - MDR1A_MOUSE -
16 PsiBlast_PDB 67.7132% -96 - C1 -4M2T - MDR1A_MOUSE -
24 PsiBlast_CBE 67.2932% -95 - C1 -4M1M - MDR1A_MOUSE -
18 PsiBlast_PDB 67.1732% -96 - C1 -4KSC - MDR1A_MOUSE -
15 PsiBlast_PDB 66.8632% -96 - C1 -4M2S - MDR1A_MOUSE -
69 HHSearch 56.0132%-108 - C1 -3VX4 6.8 ?