@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1912: (2015-12-11 )
MVELNLNHIYKKYPSASHYSVEDFDLDIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISEGELKIDGEVVNDKSPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKFSKQEIDKRVREAAANIGLTEFLERKPADLSGGQRQRVAMGRAIVRDAKVFLMDEPLSNLDAKLRVSMRAEIAKIHQRIGSTTIYVTHDQTEAMTLADRIVIMSATKNPDGDGTIGKIEQVGSPQELYNLPANKFVAGFIGSPSMNFFKVKVENGMIISEDGLRIAIPEGQEKLLESRGYKGKELIFGIRPEDISSNLLVQDTYPNANVEAEVLVSELLGSETMLYVKLGQTEFASRVEARDFHNPGEKVNLTFNVAKGHFFDADTEQAIR

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]
3 PsiBlast_PDB 91.2448% -96 - C1 -2D62 - ? -
5 PsiBlast_PDB 88.9148%-102 - C1 -1V43 - ? -
1 PsiBlast_PDB 88.4949% -98 - C1 -4TQU - ? -
111 HHSearch 88.2250% -97 - C1 -1V43 - ? -
4 PsiBlast_PDB 86.6648% -99 - C1 -1VCI - ? -
2 PsiBlast_PDB 85.6549% -97 - C1 -4TQV - ? -
116 HHSearch 83.7847% -84 - C1 -3RLF - MALK_ECOLI -
35 PsiBlast_CBE 83.2041% -98 - C1 -2IT1 - ? -
14 PsiBlast_PDB 83.1049%-101 - C1 -3PUV - MALK_ECOLI -
112 HHSearch 82.2143% -86 - C1 -2IT1 - ? -
16 PsiBlast_PDB 81.5149%-102 - C1 -3PUX - MALK_ECOLI -
34 PsiBlast_CBE 81.5044%-100 - C1 -2YYZ - ? -
15 PsiBlast_PDB 81.1849% -98 - C1 -3PUW - MALK_ECOLI -
20 PsiBlast_PDB 80.8049% -98 - C1 -4KI0 - ? -
11 PsiBlast_PDB 80.7749% -99 - C1 -3PUY - MALK_ECOLI -
114 HHSearch 80.0144% -88 - C1 -2YYZ - ? -
17 PsiBlast_PDB 79.9049%-100 - C1 -3RLF - MALK_ECOLI -
33 PsiBlast_CBE 79.7049% -94 - C1 -2R6G - MALK_ECOLI (first) -
22 PsiBlast_CBE 79.6449%-101 - C1 -3RLF - MALK_ECOLI -
32 PsiBlast_CBE 79.4649% -98 - C1 -2R6G - MALK_ECOLI (first) -
59 PsiBlast_CBE 58.4935% -96 - C1 -3C4J 3.3 ?
60 PsiBlast_CBE 57.5135% -89 - C1 -3C4J 4.6 ?
67 PsiBlast_CBE 56.9035% -91 - C1 -2OLK 3.9 ?
70 PsiBlast_CBE 56.8435% -95 - C1 -2OLK 3.9 ?
62 PsiBlast_CBE 56.0835% -90 - C1 -2Q0H 3.2 ?
68 PsiBlast_CBE 56.0535% -93 - C1 -2OLK 4.1 ?
69 PsiBlast_CBE 55.9135% -92 - C1 -2OLK 3.7 ?
73 PsiBlast_CBE 55.8235% -94 - C1 -3C41 3.6 ?
72 PsiBlast_CBE 55.6535% -92 - C1 -2OLJ 3.9 ?
71 PsiBlast_CBE 54.7235% -86 - C1 -2OLJ 3.8 ?
61 PsiBlast_CBE 54.3235% -94 - C1 -2Q0H 3.5 ?
74 PsiBlast_CBE 54.2735% -86 - C1 -3C41 5.1 ?
54 PsiBlast_CBE 54.1433% -90 - C1 -4U00 6.0 ?
85 PsiBlast_CBE 41.8131% -72 - C1 -1B0U 3.4 HISP_SALTY