@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00850: (2016-06-02 )
MSLKHFIQDALSSWMKQKGPESDIVLSSRIRLARNFEHIRFPTRYSNEEASSIIQQFEDQFSEQEIPGIGKFVLIRMNDAQPLEKRVLVEKHLISPNLTESPFGGCLLSENEEVSVMLNEEDHIRIQCLFPGFQLLEAMKAANQVDDWIEEKVDYAFNEQRGYLTSCPTNVGTGLRASVMMHLPALVLTRQINRIIPAINQLGLVVRGIYGEGSEAVGNIFQISNQITLGKSEQDIVEDLNSVAAQLIEQERSAREAIYQTSKIELEDRVYRSYGVLSNCRMIESKETAKCLSDVRLGIDLGIIKGLSSNILNELMILTQPGFLQQYSGGALRPNERDIRRAALIRERLHLEMNGKRQEDESI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DAR_A_5(4GVZ)
KARG_LIMPO
[Raw transfer]




ARG_B_9(4BG4)
?
[Raw transfer]




DAR_A_6(1BG0)
KARG_LIMPO
[Raw transfer]




ARG_A_2(4BHL)
?
[Raw transfer]




IOM_A_4(1RL9)
KARG_LIMPO
[Raw transfer]




ILO_A_4(4GW0)
KARG_LIMPO
[Raw transfer]




ORN_A_4(4GW2)
KARG_LIMPO
[Raw transfer]




ARG_A_2(4WOD)
KTRC_SCHMA
[Raw transfer]




CIR_A_4(4GVY)
KARG_LIMPO
[Raw transfer]




13 PsiBlast_PDB 91.2728% -96 - C5 -4WO8 - KTRC_SCHMA -
19 PsiBlast_PDB 91.1029% -82 - C5 -1QH4 - KCRB_CHICK -
14 PsiBlast_PDB 91.0728% -94 - C5 -4WOD 2.9 KTRC_SCHMA
15 PsiBlast_PDB 90.4728% -94 - C5 -4WOE - KTRC_SCHMA -
12 PsiBlast_PDB 90.2930% -84 - C5 -4BHL 2.4 ?
30 HHSearch 89.7427% -82 - C5 -4WOD - KTRC_SCHMA -
20 PsiBlast_PDB 87.9529% -88 - C5 -1QK1 - KCRU_HUMAN -
9 PsiBlast_PDB 87.8030% -75 - C5 -4BG4 2.9 ?
17 PsiBlast_PDB 87.2130% -82 - C5 -4AM1 - ? -
32 HHSearch 86.5427% -85 * C5 *4WOD - KTRC_SCHMA -
27 HHSearch 85.6227% -79 - C5 -1QH4 - KCRB_CHICK -
25 HHSearch 85.6125% -81 - C5 -3JPZ - ? -
24 HHSearch 85.4227% -85 - C5 -1M15 - KARG_LIMPO -
2 PsiBlast_PDB 84.8129% -74 - C5 -1M15 - KARG_LIMPO -
26 HHSearch 84.5425% -84 - C5 -3JU5 - KARG_STIJA -
29 HHSearch 84.4727% -78 - C5 -3L2D - ? -
8 PsiBlast_PDB 84.3329% -73 - C5 -1RL9 2.6 KARG_LIMPO
31 HHSearch 83.6623% -75 - C5 -4RF6 - KARG_ANTJA -
1 PsiBlast_PDB 83.5129% -72 - C5 -1BG0 2.8 KARG_LIMPO
4 PsiBlast_PDB 83.3829% -73 - C5 -4GVY 3.1 KARG_LIMPO