@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu10550: (2016-06-16 )
MQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQVLKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLKVIEDACQGIGLTDLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHGFEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIGV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

O1G_B_9(4K2M)
NTDA_BACSU
[Raw transfer]



O1G_A_3(4K2M)
NTDA_BACSU
[Raw transfer]



O1G_A_3(4K2M)
NTDA_BACSU
[Raw transfer]



PMP_A_3(4K2I)
NTDA_BACSU
[Raw transfer]



PMP_B_13(4K2I)
NTDA_BACSU
[Raw transfer]



PMP_A_7(3UWC)
?
[Raw transfer]



PMP_A_7(3UWC)
?
[Raw transfer]



O1G_B_9(4K2M)
NTDA_BACSU
[Raw transfer]



DIO_A_2(3UWC)
?
[Raw transfer]
1 PsiBlast_PDB 82.87100%-100 - C1 -4K2I 5.6 NTDA_BACSU
68 Fugue 81.96100%-101 - C1 -4K2M 2.8 NTDA_BACSU
77 HHSearch 81.86100%-101 - C1 -4K2M 7.8 NTDA_BACSU
2 PsiBlast_PDB 81.61100%-101 - C1 -4K2M 7.8 NTDA_BACSU
3 PsiBlast_PDB 81.5099% -96 - C1 -4K2B - NTDA_BACSU -
22 PsiBlast_CBE 80.91100% -98 - C1 -4K2I 5.5 NTDA_BACSU
21 PsiBlast_CBE 80.16100% -96 - C1 -4K2M 8.1 NTDA_BACSU
91 HHSearch 54.9532%-126 - C1 -3UWC 5.4 ?
17 PsiBlast_PDB 52.3431%-124 - C1 -3UWC 5.4 ?
83 HHSearch 51.8130%-107 - C1 -3BB8 - ? -
92 HHSearch 51.7632%-121 * C1 *3DR4 - GDPPS_CAUCR -
89 HHSearch 50.7732%-102 - C1 -4LC3 - ? -
94 HHSearch 50.5632%-104 - C1 -1MDO - ARNB_SALTY -
31 PsiBlast_CBE 50.4132%-124 - C1 -3DR4 - GDPPS_CAUCR -
80 HHSearch 50.3132%-100 - C1 -3NYT - WBPE_PSEAE -
78 HHSearch 50.0429%-100 - C1 -4QGR - ? -
32 PsiBlast_CBE 49.9532%-122 - C1 -3DR4 - GDPPS_CAUCR -
19 PsiBlast_PDB 49.9432%-124 - C1 -3DR4 - GDPPS_CAUCR -
14 PsiBlast_PDB 49.6030%-108 - C1 -4OCA - ? -
30 PsiBlast_CBE 49.5332%-121 - C1 -3DR4 - GDPPS_CAUCR -