@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23460: (2016-07-06 )
MKNEMHLEFSALSQNESFARVTVASFIAQLDPTMDELTEIKTVVSEAVTNAIIHGYEENCEGKVYISVTLEDHVVYMTIRDEGLGITDLEEARQPLFTTKPELERSGMGFTIMENFMDDVSIDSSPEMGTTIRLTKHLSKSKALCN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_10(1TIL)
SP2AB_GEOSE
[Raw transfer]




ADP_B_7(1L0O)
SP2AB_GEOSE
[Raw transfer]




ATP_E_12(1TIL)
SP2AB_GEOSE
[Raw transfer]




ATP_C_11(1TIL)
SP2AB_GEOSE
[Raw transfer]




ADP_A_6(1L0O)
SP2AB_GEOSE
[Raw transfer]




ADP_A_6(1L0O)
SP2AB_GEOSE
[Raw transfer]




ADP_E_5(1THN)
SP2AB_GEOSE
[Raw transfer]




ADP_F_6(1THN)
SP2AB_GEOSE
[Raw transfer]




ATP_A_7(1TID)
SP2AB_GEOSE
[Raw transfer]




ADP_A_4(1TH8)
SP2AB_GEOSE
[Raw transfer]




ADP_A_4(1TH8)
SP2AB_GEOSE
[Raw transfer]




1 PsiBlast_PDB 94.3975%-106 - C4 -1TIL 8.8 SP2AB_GEOSE
20 PsiBlast_CBE 94.1675%-103 - C4 -1TIL 8.7 SP2AB_GEOSE
23 Fugue 93.3575%-101 - C4 -1L0O 7.4 SP2AB_GEOSE
2 PsiBlast_PDB 93.3575%-101 - C4 -1L0O 7.4 SP2AB_GEOSE
19 PsiBlast_CBE 91.9375% -92 - C4 -1TIL 8.2 SP2AB_GEOSE
21 PsiBlast_CBE 91.6475%-103 - C4 -1L0O 5.3 SP2AB_GEOSE
5 PsiBlast_PDB 91.2571%-116 - C4 -1TID 7.5 SP2AB_GEOSE
4 PsiBlast_PDB 90.5375%-113 - C4 -1THN 7.8 SP2AB_GEOSE
22 PsiBlast_CBE 88.9475%-110 - C4 -1THN 7.8 SP2AB_GEOSE
33 HHSearch 86.7575%-110 - C4 -1TH8 6.4 SP2AB_GEOSE
3 PsiBlast_PDB 86.1575%-112 - C4 -1TH8 6.4 SP2AB_GEOSE
42 HHSearch 52.3427% 11 - C4 -1B3Q - CHEA_THEMA -
34 HHSearch 49.3622% -85 - C4 -3KE6 - Y1364_MYCTU -
47 HHSearch 48.0322% -4 - C4 -4U7O - ? -
28 Fugue 47.9223% 32 - C4 -1I58 - CHEA_THEMA -
7 PsiBlast_PDB 47.7627% 4 - C4 -3SL2 - -
41 HHSearch 47.4422% -13 - C4 -4BIX - CPXA_ECOLI -
44 HHSearch 45.9527% -27 - C4 -3D36 - ? -
24 Fugue 45.9519% 17 - C4 -1GKZ - BCKD_RAT -
43 HHSearch 45.8417% 21 - C4 -2C2A - ? -