@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1713: (2016-05-04 )
MTQDGTWVDESDWQLDDSEIAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNAKGLQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEKGESDAAALWSLGLGEPHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRRELLQREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALASWDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTFVLFTTGFLEAGYRRFLERRLRETFGFDGSPIRVNVRVREKRAGKRR

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]



GDP_A_2(5DN8)
DER_COXBU
[Raw transfer]



GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]



GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]



GDP_C_3(2DYK)
?
[Raw transfer]



GDP_C_3(2DYK)
?
[Raw transfer]



GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]



GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]



GDP_D_4(2DYK)
?
[Raw transfer]
86 HHSearch 98.4440%-106 - C2 -4DCU 7.1 DER_BACSU
1 PsiBlast_PDB 97.0040%-104 - C2 -4DCS - DER_BACSU -
2 PsiBlast_PDB 95.7440%-105 - C2 -4DCU 7.1 DER_BACSU
4 PsiBlast_PDB 95.5739%-106 - C2 -2HJG 6.6 DER_BACSU
3 PsiBlast_PDB 94.9740%-105 - C2 -4DCV - DER_BACSU -
84 HHSearch 90.2635%-101 - C2 -1MKY - DER_THEMA -
6 PsiBlast_PDB 89.5135%-101 - C2 -1MKY - DER_THEMA -
73 Fugue 84.5333% -86 - C2 -1MKY - DER_THEMA -
8 PsiBlast_PDB 62.2443% -88 - C2 -2DYK 7.6 ?
21 PsiBlast_CBE 62.0849%-100 - C2 -4KYU 7.5 DER_BACSU
87 HHSearch 61.4323% -80 - C2 -3IEV - ERA_AQUAE -
7 PsiBlast_PDB 61.3949% -90 - C2 -4KYU 6.7 DER_BACSU
90 HHSearch 61.3748% -90 - C2 -4KYU 6.7 DER_BACSU
98 HHSearch 61.3242% -82 * C2 *2DYK 7.5 ?
22 PsiBlast_CBE 61.1443% -90 - C2 -2DYK 7.5 ?
13 PsiBlast_PDB 60.7831% -82 - C2 -3R9W - ERA_AQUAE -
95 HHSearch 60.6531% -82 - C2 -3IEV 10.6 ERA_AQUAE
14 PsiBlast_PDB 60.1231% -78 - C2 -3R9X - ERA_AQUAE -
15 PsiBlast_PDB 59.4631% -75 - C2 -3IEV 10.6 ERA_AQUAE
11 PsiBlast_PDB 58.8736% -78 - C2 -1WF3 10.8 ERA_THET8
99 HHSearch 58.4032% -85 - C2 -5DN8 8.2 DER_COXBU
91 HHSearch 57.7735% -78 - C2 -1WF3 10.8 ERA_THET8
92 HHSearch 55.9432% -90 - C2 -1MKY 7.4 DER_THEMA
101 HHSearch 51.6130% -91 - C2 -3GEH 6.8 MNME_NOSS1
12 PsiBlast_PDB 48.3136% -88 - C2 -3GEH 6.0 MNME_NOSS1