@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2343c: (2016-05-09 )
MSGRISDRDIAAIREGARIEDVVGDYVQLRRAGADSLKGLCPFHNEKSPSFHVRPNHGHFHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLAANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFEFEELEAAGLSRQGRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTPETLLYKKSSVMFGIDLAKRDIAKGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFDGEQKLAGQSFVAVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVPMVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQRPTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAAIDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQVDDDKLPRYIAGVLARLQEVWLGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQASGDDLTA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]



CTP_A_2(4EE1)
DNAG_STAAU
[Raw transfer]



UTP_A_5(4EDR)
DNAG_STAAU
[Raw transfer]



ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]



0O2_A_3(4EDV)
DNAG_STAAU
[Raw transfer]



G4P_A_3(4EDT)
DNAG_STAAU
[Raw transfer]



NACID_C_1(3B39)
DNAG_ECOLI
[Raw transfer]
-
BEN_A_4(4EDR)
DNAG_STAAU
[Raw transfer]



BEN_A_4(4EDK)
DNAG_STAAU
[Raw transfer]



NACID_D_2(3B39)
DNAG_ECOLI
[Raw transfer]
-
23 HHSearch 96.6830% -95 - C5 -2AU3 - DNAG_AQUAE -
1 PsiBlast_PDB 92.0431% -85 - C5 -2AU3 - DNAG_AQUAE -
44 Fugue 83.6734% -99 - C5 -1DD9 - DNAG_ECOLI -
24 HHSearch 82.6034% -97 - C5 -1DD9 - DNAG_ECOLI -
45 Fugue 82.3527% -90 - C5 -4EDK - DNAG_STAAU -
25 HHSearch 81.5427% -94 - C5 -4EDG - DNAG_STAAU -
3 PsiBlast_PDB 81.4733%-100 - C5 -1DDE - DNAG_ECOLI -
2 PsiBlast_PDB 81.1333%-103 - C5 -1DD9 - DNAG_ECOLI -
4 PsiBlast_PDB 81.0933%-101 - C5 -3B39 3.6 DNAG_ECOLI
21 PsiBlast_CBE 79.9733% -94 - C5 -3B39 5.5 DNAG_ECOLI
11 PsiBlast_PDB 75.2631% -86 - C5 -4EDV 4.3 DNAG_STAAU
7 PsiBlast_PDB 74.8931% -85 - C5 -4EDG 6.5 DNAG_STAAU
8 PsiBlast_PDB 74.5731% -83 - C5 -4EDK 7.2 DNAG_STAAU
9 PsiBlast_PDB 74.5431% -85 - C5 -4EDR 6.7 DNAG_STAAU
10 PsiBlast_PDB 74.4031% -86 - C5 -4EDT 4.3 DNAG_STAAU
12 PsiBlast_PDB 74.0031% -83 - C5 -4EE1 6.1 DNAG_STAAU
6 PsiBlast_PDB 73.7331% -88 - C5 -4E2K - DNAG_STAAU -
5 PsiBlast_PDB 62.1233% -2 - C5 -1EQN - DNAG_ECOLI -
49 Fugue 57.5215% -37 - C1 -3J16 - RLI1_YEAST -
51 Fugue 56.8217% -49 - C6 -4TUU - PK3CA_HUMAN -