@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3089: (2016-05-16 )
MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVPK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_6(1V25)
LCFCS_THET8
[Raw transfer]



AYL_A_2(3NI2)
?
[Raw transfer]



ATP_A_8(5BUR)
MENE_BACSU
[Raw transfer]



AMP_A_2(3A9V)
?
[Raw transfer]



AMP_A_5(5BUS)
MENE_BACSU
[Raw transfer]



AMP_B_8(5BUS)
MENE_BACSU
[Raw transfer]



IXN_B_8(3O83)
?
[Raw transfer]
1 PsiBlast_PDB 99.37100%-125 - C1 -3R44 - FAC13_MYCTU -
31 HHSearch 98.91100%-123 - C1 -3R44 - FAC13_MYCTU -
2 PsiBlast_PDB 86.74100%-125 - C1 -3T5B - FAC13_MYCTU -
3 PsiBlast_PDB 86.27100%-128 - C1 -3T5C - FAC13_MYCTU -
34 HHSearch 73.9628% -94 - C1 -4WV3 - ? -
5 PsiBlast_PDB 73.7433%-109 - C1 -5BUS 5.5 MENE_BACSU
32 HHSearch 73.2526% -94 - C1 -2D1S - LUCI_LUCCR -
10 PsiBlast_PDB 73.2232%-104 - C1 -3NI2 8.2 ?
9 PsiBlast_PDB 73.1332%-105 - C1 -3A9V 5.8 ?
6 PsiBlast_PDB 73.0834%-112 - C1 -4FUQ - ? -
17 PsiBlast_PDB 72.5229%-105 - C1 -4WV3 - ? -
4 PsiBlast_PDB 72.5033%-109 - C1 -5BUR 6.9 MENE_BACSU
22 PsiBlast_CBE 72.4133%-119 - C1 -5BUQ - MENE_BACSU -
7 PsiBlast_PDB 70.3932%-115 - C1 -1ULT - LCFCS_THET8 -
18 PsiBlast_PDB 69.8729%-100 - C1 -3CW8 - ? -
19 PsiBlast_PDB 69.7829% -99 - C1 -3DLP - ? -
8 PsiBlast_PDB 69.6832%-103 - C1 -3A9U - ? -
20 PsiBlast_PDB 69.4429%-105 - C1 -1T5D - ? -
16 PsiBlast_PDB 69.2129%-100 - C1 -2QW0 - ? -
12 PsiBlast_PDB 68.8629%-100 - C1 -2QVX - ? -
21 PsiBlast_CBE 66.1433%-116 - C1 -5BUS 5.3 MENE_BACSU
23 PsiBlast_CBE 65.9332%-107 - C1 -1V25 5.5 LCFCS_THET8