@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0001: (2015-12-17 )
MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_8(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_7(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_C_9(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




115 HHSearch 92.9538% -96 - C4 -1L8Q 8.5 DNAA_AQUAE
22 PsiBlast_CBE 84.0538%-104 - C4 -2Z4R 8.0 DNAA_THEMA
1 PsiBlast_PDB 83.4138%-104 - C4 -2Z4R 7.6 DNAA_THEMA
21 PsiBlast_CBE 83.3538%-103 - C4 -2Z4R 7.4 DNAA_THEMA
2 PsiBlast_PDB 82.7338%-105 - C4 -2Z4S 6.8 DNAA_THEMA
114 HHSearch 79.3530%-102 - C4 -2Z4S 6.8 DNAA_THEMA
7 PsiBlast_PDB 66.5226% -92 - C4 -3BOS - ? -
8 PsiBlast_PDB 65.1226% -88 - C4 -3SC3 - ? -
121 HHSearch 60.2321% -86 * C4 *3PFI - ? -
123 HHSearch 59.9623% -81 - C4 -1HQC - RUVB_THET8 -
109 Fugue 59.4019% -56 - C4 -1HQC - RUVB_THET8 -
3 PsiBlast_PDB 58.1680% -53 - C7 -1J1V - -
117 HHSearch 57.8183% -49 - C7 -1J1V - -
134 HHSearch 57.8021% -95 - C4 -1IN4 - RUVB_THEMA -
128 HHSearch 57.7422% -85 - C4 -1IXZ - FTSH_THET8 -
4 PsiBlast_PDB 57.5047% -93 * C5 *2E0G - DNAA_ECOLI -
124 HHSearch 56.9922% -83 - C4 -1IY2 - FTSH_THET8 -
106 Fugue 56.5041% -91 - C5 -2E0G - DNAA_ECOLI -
130 HHSearch 56.3521%-104 - C4 -3B9P - -
131 HHSearch 55.9120% -85 - C4 -2CE7 - FTSH_THEMA -