@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1071: (2016-01-26 )
MSRPILEVSGLTMRFGGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQPTGGLIRLDGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNLTEFANRSAGTLAYGQQRRLEIARCMMTRPRILMLDEPAAGLNPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVINQGAPLADGTPEQIRDNPDVIKAYLGEA

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ATP_A_2(1JI0)
?
[Raw transfer]



ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]



ADP_B_10(1G9X)
LIVG_METJA
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



ADP_C_12(1G9X)
LIVG_METJA
[Raw transfer]



ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]
3 PsiBlast_PDB 93.2232%-110 - C1 -1GAJ - LIVG_METJA -
1 PsiBlast_PDB 91.9832%-119 - C1 -1G6H 6.1 LIVG_METJA
50 Fugue 91.6634%-112 - C1 -1G6H 5.1 LIVG_METJA
22 PsiBlast_CBE 90.3032%-111 - C1 -1G9X 5.6 LIVG_METJA
2 PsiBlast_PDB 89.1932%-109 - C1 -1G9X 6.0 LIVG_METJA
46 HHSearch 89.1434%-115 - C1 -1G6H - LIVG_METJA -
5 PsiBlast_PDB 89.0531%-119 - C1 -1JI0 - ? -
21 PsiBlast_CBE 88.0832%-105 - C1 -1G9X 4.5 LIVG_METJA
48 HHSearch 87.2031%-110 - C1 -1B0U - HISP_SALTY -
56 Fugue 86.2726%-121 - C1 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 86.2232%-113 - C1 -4WBS - ? -
4 PsiBlast_PDB 85.3332%-112 - C1 -4WBS - ? -
55 Fugue 85.2629%-116 - C1 -1Z47 - ? -
52 Fugue 84.4427%-107 - C1 -1OXS - ? -
13 PsiBlast_PDB 82.6030%-121 - C1 -4YMW - ? -
45 HHSearch 82.4928%-115 - C1 -2OLJ - ? -
7 PsiBlast_PDB 82.4730%-116 - C1 -2YYZ - ? -
10 PsiBlast_PDB 82.3230%-119 - C1 -4YMT - ? -
9 PsiBlast_PDB 82.2430%-120 - C1 -4YMS - ? -
11 PsiBlast_PDB 82.0530%-119 - C1 -4YMU - ? -
41 HHSearch 80.2631%-116 - C1 -1JI0 5.8 ?
15 PsiBlast_PDB 79.9331%-102 - C1 -4QC2 7.3 ?
25 PsiBlast_CBE 79.0531%-104 - C1 -4QC2 7.3 ?
18 PsiBlast_PDB 78.7430%-108 - C1 -4P33 7.6 LPTB_ECOLI
14 PsiBlast_PDB 78.6531%-105 - C1 -4P32 6.3 LPTB_ECOLI
24 PsiBlast_CBE 77.7131%-107 - C1 -4P32 6.5 LPTB_ECOLI
19 PsiBlast_PDB 50.8031% -11 - C1 -4P31 6.3 LPTB_ECOLI