@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1628: (2016-01-31 )
MPDIRCIAVVGTGAMGTGIAQIAAQAGLTVWLFDSRAEAAAEARQRLRQTFESLCGKGKLSAADAEAAQNRLRVAERLEQLGDCELVVEAIVERLEAKQELLRRLEAIVAPESILASNTSSLSITAIAAACERPQRVAGFHFFNPVPLMRVVEVVDGLASAPEVGDALLALAARLGHRGVRTKDSPGFIVNHAGRAYGTEALRILGEGVAECAEIDRVLRECAGFRMGPFELLDLTGLDVSHPVMESIYQQYYQEPRYRPHPLTRQLLAAGRLGRKSGQGFYRYVDGQPQDKPGPQPVPQAAARPPVWLGCENEDDRRTLAELLHRLGVEPETGERPSAAALCLLAAWGEDLSSAVQRFACPAERSVGIDLLCDLERRRCLMLSPLTAPAMRDAAHALLAGDGVGVTVLRDSPGFVVQRVLAMIVNLACDIAQQGIASVEDIDQAVHLGLGYPHGPLEWGDRLGPRRLLSILQRLQALTGDPRYRPSPWLRRRAQLGMSLRAGETAAVD

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_E_5(1M75)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1M76)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(1M75)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(1M76)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSO)
HCDH_HUMAN
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_B_4(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_B_6(4KUG)
?
[Raw transfer]




NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]




NAD_D_4(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_A_3(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_C_7(4KUG)
?
[Raw transfer]




NAD_A_5(4KUG)
?
[Raw transfer]




NAD_C_3(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_D_8(4KUG)
?
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




3HC_C_3(1F12)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_D_4(1IL0)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1F0Y)
HCDH_HUMAN
[Raw transfer]




CAA_C_3(1F0Y)
HCDH_HUMAN
[Raw transfer]




21 PsiBlast_CBE 93.3739%-107 - C2 -3MOG - PAAH_ECOLI -
1 PsiBlast_PDB 93.2439%-107 - C2 -3MOG - PAAH_ECOLI -
22 PsiBlast_CBE 92.9839%-108 - C2 -3MOG - PAAH_ECOLI -
109 Fugue 91.4128% -93 - C2 -1WDK - FADB_PSEFR -
84 HHSearch 88.4238% -95 - C2 -3MOG - PAAH_ECOLI -
85 HHSearch 82.4427%-100 - C2 -2WTB - MFP2_ARATH -
86 HHSearch 78.7830% -91 - C2 -1ZCJ - ECHP_RAT -
87 HHSearch 74.5423% -96 - C2 -3K6J - ? -
16 PsiBlast_PDB 73.4439%-105 - C2 -4KUG 8.4 ?
26 PsiBlast_CBE 73.0339%-103 - C2 -4PZE - ? -
40 PsiBlast_CBE 72.8439%-106 - C2 -4PZD - ? -
37 PsiBlast_CBE 72.6239%-105 - C2 -4PZD - ? -
49 PsiBlast_CBE 72.5739%-105 - C2 -4KUH - ? -
29 PsiBlast_CBE 72.4139%-103 - C2 -4PZE - ? -
17 PsiBlast_PDB 72.2439%-103 - C2 -4KUE - ? -
18 PsiBlast_PDB 72.2239%-103 - C2 -4R1N - ? -
5 PsiBlast_PDB 72.1939%-102 - C2 -4PZD - ? -
28 PsiBlast_CBE 72.1139% -97 - C2 -4PZE - ? -
32 PsiBlast_CBE 72.0639%-104 - C2 -4PZE - ? -
54 PsiBlast_CBE 72.0239%-104 - C2 -4KUH - ? -
57 PsiBlast_CBE 71.9539%-105 - C2 -4KUG 8.5 ?
56 PsiBlast_CBE 71.5939%-103 - C2 -4KUG 8.0 ?
89 HHSearch 70.9238% -96 * C2 *1F0Y 6.1 HCDH_HUMAN
41 PsiBlast_CBE 70.1737% -99 - C2 -1F17 8.6 HCDH_HUMAN
7 PsiBlast_PDB 69.9537% -99 - C2 -1F12 5.1 HCDH_HUMAN
10 PsiBlast_PDB 69.8937% -97 - C2 -1LSO 9.0 HCDH_HUMAN
55 PsiBlast_CBE 69.3139%-101 - C2 -4KUG 8.4 ?
2 PsiBlast_PDB 68.8938% -96 - C2 -3HDH 9.0 HCDH_PIG
45 PsiBlast_CBE 68.8837% -90 - C2 -1IL0 4.5 HCDH_HUMAN
3 PsiBlast_PDB 68.7237% -94 - C2 -1F0Y 6.1 HCDH_HUMAN
14 PsiBlast_PDB 68.5937% -92 - C2 -1M75 9.6 HCDH_HUMAN
44 PsiBlast_CBE 68.4237% -97 - C2 -1LSJ 7.5 HCDH_HUMAN
9 PsiBlast_PDB 68.4037% -98 - C2 -1F17 8.9 HCDH_HUMAN
107 Fugue 68.1137% -92 - C2 -1IL0 5.0 HCDH_HUMAN
58 PsiBlast_CBE 68.0137% -92 - C2 -1M76 10.2 HCDH_HUMAN
47 PsiBlast_CBE 68.0137% -94 - C2 -1M75 9.4 HCDH_HUMAN
46 PsiBlast_CBE 68.0137% -96 - C2 -3HAD 9.1 HCDH_HUMAN
11 PsiBlast_PDB 67.9637% -91 - C2 -1IL0 5.0 HCDH_HUMAN
13 PsiBlast_PDB 67.8637% -94 - C2 -3HAD 8.6 HCDH_HUMAN
12 PsiBlast_PDB 67.8437%-100 - C2 -1LSJ 6.7 HCDH_HUMAN
43 PsiBlast_CBE 67.8137% -98 - C2 -1LSO 8.7 HCDH_HUMAN
24 PsiBlast_CBE 67.7237% -92 - C2 -1F0Y 5.1 HCDH_HUMAN
19 PsiBlast_PDB 67.5737% -93 - C2 -1M76 10.4 HCDH_HUMAN
23 PsiBlast_CBE 65.5938% -94 - C2 -3HDH 8.6 HCDH_PIG