@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2341: (2016-02-06 )
MADLKIRNLQKGFDGQAIIKGIDLDVRDREFVVFVGPSGCGKSTLLRLIAGLEEASGGSIALDGTDITDTPPAKRDLAMVFQTYALYPHMTVRRNLSFALDLAGVDKREVAAKVDAAARILELQALLERKPRQLSGGQRQRVAIGRAIVRNPKIFLFDEPLSNLDAALRVQMRLELARLHQELAATMIYVTHDQVEAMTLADKVVVLNGGRVEQVGSPLELYHHPANLFVAGFLGTPKMGFLRGHLSRNQGERCEVALECGARVGLPLCAGELATGSPVTLGIRPEHLNIARPGHAFQGLLRVAADVSERLGSDSFCHVRADSGEMLTLRVRGDFAPDYGAPLELGFDPEHCHLFDSNGQALDKRLQQAA

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




18 PsiBlast_PDB 92.2750%-127 - C2 -4TQU - ? -
9 PsiBlast_PDB 92.2451%-127 - C2 -3PUV - MALK_ECOLI -
6 PsiBlast_PDB 92.0051%-126 - C2 -3PUY - MALK_ECOLI -
11 PsiBlast_PDB 91.9651%-127 - C2 -3PUX - MALK_ECOLI -
12 PsiBlast_PDB 91.1051%-128 - C2 -3RLF - MALK_ECOLI -
2 PsiBlast_PDB 91.0951%-128 - C2 -1Q1E - MALK_ECOLI -
21 PsiBlast_CBE 90.8451%-125 - C2 -4KI0 - ? -
110 HHSearch 90.7551%-127 - C2 -3RLF - MALK_ECOLI -
10 PsiBlast_PDB 90.4451%-125 - C2 -3PUW - MALK_ECOLI -
22 PsiBlast_CBE 90.2351%-127 - C2 -3RLF - MALK_ECOLI -
13 PsiBlast_PDB 90.0551%-122 - C2 -4JBW - MALK_ECOLI -
23 PsiBlast_CBE 90.0051%-126 - C2 -3PUZ - MALK_ECOLI -
28 PsiBlast_CBE 89.9251%-123 - C2 -2AWN - MALK_ECOLI -
19 PsiBlast_PDB 89.8650%-127 - C2 -4TQV - ? -
15 PsiBlast_PDB 89.6651%-125 - C2 -4KI0 - ? -
26 PsiBlast_CBE 89.6551%-121 - C2 -2AWO - MALK_ECOLI -
25 PsiBlast_CBE 89.5851%-129 - C2 -2AWO - MALK_ECOLI -
14 PsiBlast_PDB 89.5051%-128 - C2 -4KHZ - ? -
17 PsiBlast_PDB 89.4350%-124 - C2 -2R6G - MALK_ECOLI (first) -
32 PsiBlast_CBE 89.3050%-128 - C2 -2R6G - MALK_ECOLI (first) -
119 HHSearch 57.4835%-115 - C2 -2OLJ 5.9 ?
58 PsiBlast_CBE 57.3935%-114 - C2 -3C4J 5.2 ?
71 PsiBlast_CBE 57.1935%-117 - C2 -2OLJ 5.9 ?
51 PsiBlast_CBE 57.1340%-106 - C2 -4U00 6.1 ?
66 PsiBlast_CBE 56.2135%-107 - C2 -2OLK 5.9 ?
68 PsiBlast_CBE 56.0735%-108 - C2 -2OLK 5.2 ?
61 PsiBlast_CBE 55.8035%-113 - C2 -2Q0H 5.1 ?
60 PsiBlast_CBE 55.5335%-112 - C2 -2Q0H 5.3 ?
67 PsiBlast_CBE 55.3235%-108 - C2 -2OLK 6.3 ?
69 PsiBlast_CBE 55.2835%-111 - C2 -2OLK 6.0 ?
81 PsiBlast_CBE 55.2033%-104 - C2 -1L2T 4.3 Y796_METJA
59 PsiBlast_CBE 55.1735%-110 - C2 -3C4J 6.5 ?
72 PsiBlast_CBE 54.7535%-110 - C2 -3C41 5.3 ?
83 PsiBlast_CBE 54.5433%-104 - C2 -3TIF 3.9 Y796_METJA
82 PsiBlast_CBE 54.4633%-108 - C2 -3TIF 6.2 Y796_METJA
56 PsiBlast_CBE 54.4536%-117 - C2 -3FVQ 7.1 FBPC_NEIG1
57 PsiBlast_CBE 54.3536%-116 - C2 -3FVQ 7.1 FBPC_NEIG1
125 HHSearch 53.9233%-110 - C2 -1B0U 6.2 HISP_SALTY
70 PsiBlast_CBE 53.9135%-103 - C2 -2OLJ 5.5 ?
73 PsiBlast_CBE 53.1835%-109 - C2 -3C41 5.7 ?
76 PsiBlast_CBE 52.9735%-104 - C2 -4YMU 6.3 ?
80 PsiBlast_CBE 52.9033%-101 - C2 -1L2T 6.5 Y796_METJA
77 PsiBlast_CBE 52.8735%-106 - C2 -4YMU 5.6 ?
74 PsiBlast_CBE 52.7935%-103 - C2 -4YMV 5.7 ?
75 PsiBlast_CBE 52.6735%-104 - C2 -4YMV 6.0 ?
92 PsiBlast_CBE 51.9735%-109 - C2 -1B0U 6.2 HISP_SALTY
79 PsiBlast_CBE 47.8032%-113 - C2 -4MKI 2.1 ECFA2_CALS4
78 PsiBlast_CBE 47.6332%-112 - C2 -4MKI 2.3 ECFA2_CALS4