@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2552: (2016-02-08 )
MIPCEEEIQIRDMARQFAQERLKPFAADWDREHRFPAEAIREMADLGFLGMLVPEEWGGAQTGHLAYAMALEEIAAGDGACSTIMSVHNSVGCMPIHKFGSAEQKERFLRPLAQGSMLGAFALTEPQAGSDASFLKTRARRDGDHYVLNGAKQFITSGSHAGMVIVFAVTDPDAGKRGISAFIVPTDTPGYEVVRIEDKLGQHASDTCQLAFNDLRIPATLRLGEEGEGYRIALANLEGGRIGIAAQAVGMARAAFEAARDYAHERETFGKPIIEHQAVAFRLADMATRIAVARQMVHHAASLREAGLPCLTEASMAKLFASEMAEEVCSAAIQTLGGYGYLKDFPVERIYRDVRVCQIYEGTSDVQRLVIARSL

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UCC_B_6(4Y9J)
?
[Raw transfer]



FAD_B_11(3MDE)
ACADM_PIG
[Raw transfer]



FDA_A_3(4N5F)
?
[Raw transfer]



FAD_A_4(1UKW)
?
[Raw transfer]



FAD_A_9(3MDE)
ACADM_PIG
[Raw transfer]



FAD_B_5(1UKW)
?
[Raw transfer]



FAD_A_3(2D29)
?
[Raw transfer]



FAD_A_3(2D29)
?
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_D_4(2DVL)
?
[Raw transfer]



FAD_B_7(3MDD)
ACADM_PIG
[Raw transfer]



FAD_B_4(2D29)
?
[Raw transfer]



CAA_B_7(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_A_3(3NF4)
?
[Raw transfer]



FAD_A_4(1UKW)
?
[Raw transfer]



CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]



CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_A_5(3MDD)
ACADM_PIG
[Raw transfer]



COS_A_4(4L1F)
?
[Raw transfer]



CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_A_3(3NF4)
?
[Raw transfer]



FDA_A_2(3SF6)
?
[Raw transfer]



CAA_G_7(1JQI)
ACADS_RAT
[Raw transfer]



CAA_E_5(1JQI)
ACADS_RAT
[Raw transfer]



COS_B_9(4L1F)
?
[Raw transfer]



FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FDA_B_15(4N5F)
?
[Raw transfer]
1 PsiBlast_PDB 94.8676% -98 - C2 -4U83 - ? -
23 PsiBlast_CBE 94.1976% -96 - C2 -4U83 - ? -
26 PsiBlast_CBE 93.5362% -98 - C2 -4M9A - ? -
25 PsiBlast_CBE 93.0662%-100 - C2 -4M9A - ? -
21 PsiBlast_CBE 92.8176% -95 - C2 -4U83 - ? -
22 PsiBlast_CBE 92.1376% -93 - C2 -4U83 - ? -
2 PsiBlast_PDB 91.1063% -96 - C2 -4N5F 9.5 ?
3 PsiBlast_PDB 90.6362% -99 - C2 -4M9A - ? -
24 PsiBlast_CBE 89.3863%-100 - C2 -4N5F 7.7 ?
32 PsiBlast_CBE 84.7049% -95 - C2 -2VIG - ACADS_HUMAN -
7 PsiBlast_PDB 83.4545% -92 - C2 -1UKW 9.6 ?
37 PsiBlast_CBE 83.0549% -98 - C2 -2DVL 9.2 ?
14 PsiBlast_PDB 82.5548% -89 - C2 -2D29 8.5 ?
87 PsiBlast_CBE 81.9538% -98 - C2 -2PG0 - ? -
28 PsiBlast_CBE 81.9348% -95 - C2 -1JQI 6.4 ACADS_RAT
45 PsiBlast_CBE 81.7948% -89 - C2 -2D29 8.8 ?
4 PsiBlast_PDB 81.7346% -89 - C2 -4L1F 7.0 ?
6 PsiBlast_PDB 81.6949% -94 - C2 -2VIG - ACADS_HUMAN -
36 PsiBlast_CBE 81.6045% -93 - C2 -1UKW 9.1 ?
53 PsiBlast_CBE 81.4937% -94 - C2 -1T9G - ACADM_HUMAN -
8 PsiBlast_PDB 81.2149% -95 - C2 -2DVL 8.6 ?
109 HHSearch 80.8347% -87 - C2 -2D29 8.5 ?
27 PsiBlast_CBE 80.7646% -90 - C2 -4L1F 6.0 ?
110 HHSearch 80.4545% -87 - C2 -1UKW 9.6 ?
121 HHSearch 80.4449% -95 - C2 -2DVL 8.6 ?
5 PsiBlast_PDB 80.1448% -94 - C2 -1JQI 5.4 ACADS_RAT
122 Fugue 79.6242% -91 - C2 -1BUC 5.2 ACDS_MEGEL
78 PsiBlast_CBE 79.3536% -92 - C2 -3MDE 9.5 ACADM_PIG
38 PsiBlast_CBE 78.9643% -94 - C2 -1BUC 5.6 ACDS_MEGEL
124 Fugue 78.9237% -92 - C2 -2Z1Q 8.0 ?
80 PsiBlast_CBE 78.9036% -91 - C2 -3MDD 9.2 ACADM_PIG
79 PsiBlast_CBE 78.6436% -92 - C2 -3MDE 9.0 ACADM_PIG
112 HHSearch 78.5542% -91 - C2 -1BUC 5.2 ACDS_MEGEL
9 PsiBlast_PDB 78.4743% -93 - C2 -1BUC 5.2 ACDS_MEGEL
81 PsiBlast_CBE 78.1636% -91 - C2 -3MDD 8.5 ACADM_PIG
15 PsiBlast_PDB 77.1941% -99 - C2 -3NF4 8.2 ?
104 HHSearch 77.0142% -98 - C2 -3NF4 8.2 ?
117 HHSearch 75.9237% -91 - C2 -3SF6 9.5 ?
119 HHSearch 69.0034% -87 - C2 -2UXW 9.4 ACADV_HUMAN
123 Fugue 68.9533% -87 - C2 -2UXW 9.4 ACADV_HUMAN