@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2716: (2016-02-10 )
MNLFDTLTLPNGSTIPNRLAKAAMEENMADAAQAPSERLMRLYQAWADGGAGLLISGNVMVDSRAMTGPGGVVLEDDAQLEKFRRWARIGRSAGAQFWLQINHPGRQMQANLGQQAWAPSAVPLELGGMSRHFATPKAMDEAMIAEVIQRFARSAGLAERAGFSGVEIHAAHGYLLSQFLSPLSNRRSDAWGGSLENRARLLLEIVRAVRAEVAPGFAVAVKLNSADFQRGGFSADDAREVVRMLDGLGVDLVELSGGSYEAPAMQGEARDGRTLAREAYFVEFARDIRAAARMPVMVTGGIRRRPVAEQVLASGVDMVGIGTALAIEPNLPRDWRAGKDSAPQLRPITWRNKPLASLANMAAVKFQLRKLSRGRATNPRVSPLCALLAQQAGALLQTRRYRRLMRSRAEA

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1PE_A_14(4GXM)
OYE1_SACPS
[Raw transfer]




EPE_B_15(4RNW)
OYE1_SACPS
[Raw transfer]




EPE_A_4(4RNW)
OYE1_SACPS
[Raw transfer]




3RN_A_4(3TX9)
OYE1_SACPS
[Raw transfer]




4CH_A_7(4DF2)
?
[Raw transfer]




0WV_A_3(4H4I)
OYE1_SACPS
[Raw transfer]




0WU_A_15(4GE8)
OYE1_SACPS
[Raw transfer]




3RN_A_3(3RND)
OYE1_SACPS
[Raw transfer]




FMN_A_13(4GBU)
OYE1_SACPS
[Raw transfer]




FMN_B_8(4RNX)
OYE1_SACPS
[Raw transfer]




0WV_A_3(4GBU)
OYE1_SACPS
[Raw transfer]




FMN_A_13(4H4I)
OYE1_SACPS
[Raw transfer]




FMN_A_3(4RNX)
OYE1_SACPS
[Raw transfer]




FMN_A_8(4GXM)
OYE1_SACPS
[Raw transfer]




07V_A_10(4GWE)
OYE1_SACPS
[Raw transfer]




FMN_A_3(1K02)
OYE1_SACPS
[Raw transfer]




FMN_C_3(1OYA)
OYE1_SACPS
[Raw transfer]




FMN_A_2(3TX9)
OYE1_SACPS
[Raw transfer]




FMN_A_2(4GWE)
OYE1_SACPS
[Raw transfer]




FMN_A_3(4RNW)
OYE1_SACPS
[Raw transfer]




FMN_A_2(3TXZ)
OYE1_SACPS
[Raw transfer]




FMN_A_2(3RND)
OYE1_SACPS
[Raw transfer]




FMN_B_14(4RNW)
OYE1_SACPS
[Raw transfer]




FMN_A_2(4H6K)
OYE1_SACPS
[Raw transfer]




FMN_B_2(1BWL)
OYE1_SACPS
[Raw transfer]




FMN_B_2(1BWK)
OYE1_SACPS
[Raw transfer]




07V_A_3(3TXZ)
OYE1_SACPS
[Raw transfer]




FMN_A_12(4GE8)
OYE1_SACPS
[Raw transfer]




FMN_A_3(1K03)
OYE1_SACPS
[Raw transfer]




FMN_A_2(3UPW)
?
[Raw transfer]




FMN_A_2(3TJL)
?
[Raw transfer]




FMN_A_2(4M5P)
?
[Raw transfer]




FMN_A_2(4DF2)
?
[Raw transfer]




114 HHSearch 91.6734% -89 - C1 -3GR7 - NAMA_GEOKA -
1 PsiBlast_PDB 91.4134% -94 - C3 -3GR7 - NAMA_GEOKA -
22 PsiBlast_CBE 91.3234% -94 - C3 -3GR7 - NAMA_GEOKA -
112 HHSearch 90.9333% -84 - C1 -3HGJ - ? -
2 PsiBlast_PDB 90.9334% -94 - C3 -3GR8 - NAMA_GEOKA -
21 PsiBlast_CBE 90.5434% -97 - C3 -3GR8 - NAMA_GEOKA -
101 Fugue 90.0825% -78 * C1 *1PS9 - FADH_ECOLI -
111 HHSearch 88.1230% -90 - C1 -1Z41 - NAMA_BACSU -
113 HHSearch 87.3329% -91 - C1 -3KRU - ? -
4 PsiBlast_PDB 86.6028% -90 - C3 -3KRZ - ? -
3 PsiBlast_PDB 86.4928% -88 * C3 *3KRU - ? -
17 PsiBlast_PDB 85.0330% -90 - C3 -2H8Z - ? -
5 PsiBlast_PDB 84.8430% -87 - C3 -1Z41 - NAMA_BACSU -
19 PsiBlast_PDB 84.6430% -91 - C3 -2H8X - ? -
18 PsiBlast_PDB 84.5730% -89 - C3 -2H90 - ? -
103 Fugue 84.0124% -75 - C1 -3K30 - ? -
6 PsiBlast_PDB 83.6830% -86 - C3 -1Z42 - NAMA_BACSU -
9 PsiBlast_PDB 83.6329% -97 - C3 -1PS9 - FADH_ECOLI -
13 PsiBlast_PDB 83.6230% -90 - C3 -3L67 - ? -
8 PsiBlast_PDB 83.4230% -84 - C3 -1Z48 - NAMA_BACSU -
58 PsiBlast_CBE 47.3753% -87 - C3 -3RND 3.8 OYE1_SACPS
51 PsiBlast_CBE 46.6753% -88 - C3 -3TXZ 3.9 OYE1_SACPS
74 PsiBlast_CBE 46.2353% -86 - C3 -4RNW 3.9 OYE1_SACPS
57 PsiBlast_CBE 46.1353% -91 - C3 -4H6K 3.7 OYE1_SACPS
52 PsiBlast_CBE 46.0853% -87 - C3 -4H4I 5.0 OYE1_SACPS
64 PsiBlast_CBE 45.9053% -87 - C3 -4RNX 4.0 OYE1_SACPS
65 PsiBlast_CBE 45.5053% -85 - C3 -4RNX 3.9 OYE1_SACPS
53 PsiBlast_CBE 45.1453% -85 - C3 -4GE8 4.3 OYE1_SACPS
55 PsiBlast_CBE 45.1353% -84 - C3 -4GWE 4.2 OYE1_SACPS
63 PsiBlast_CBE 44.2553% -78 - C3 -1BWL 3.7 OYE1_SACPS
59 PsiBlast_CBE 43.9253% -85 - C3 -3TX9 3.5 OYE1_SACPS
56 PsiBlast_CBE 43.7853% -86 - C3 -4GBU 4.8 OYE1_SACPS
54 PsiBlast_CBE 43.7153% -84 - C3 -4GXM 3.9 OYE1_SACPS
75 PsiBlast_CBE 43.4453% -84 - C3 -4RNW 3.9 OYE1_SACPS
60 PsiBlast_CBE 43.2153% -82 - C3 -1OYA 3.8 OYE1_SACPS
62 PsiBlast_CBE 42.1253% -86 - C3 -1K02 3.9 OYE1_SACPS
84 PsiBlast_CBE 42.0551% -80 - C3 -1BWK 3.7 OYE1_SACPS
61 PsiBlast_CBE 39.6653% -76 - C3 -1K03 2.6 OYE1_SACPS
41 PsiBlast_CBE 33.8255% -51 - C3 -4DF2 3.9 ?
44 PsiBlast_CBE 33.4255% -48 - C3 -4M5P 3.9 ?
43 PsiBlast_CBE 33.0455% -49 - C3 -3TJL 3.9 ?
42 PsiBlast_CBE 33.0455% -48 - C3 -3UPW 3.9 ?