@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2987: (2016-02-12 )
MNDKSVLSCRNLSKSYDEGPQSVQVLSGVELNLLPGERVAIVGSSGSGKSTLLNMLGGLDTPSAGSVWLAGEELSALNETARGLLRNRALGFVYQFHHLLPEFTALENVCMPLLIGRTPIAEARQRAAELLERVGLGHRLSHKPAELSGGERQRVAIARALVNRPQLVLLDEPTGNLDQHTAQGIQELMLELSRSLQTSFLVVTHDLQLAGHMDRILRLEEGRLIAA

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




21 PsiBlast_CBE 94.5147%-119 - C1 -2PCJ - LOLD_AQUAE -
2 PsiBlast_PDB 94.4647%-115 - C1 -2PCL - LOLD_AQUAE -
117 HHSearch 93.6748%-114 - C1 -2PCJ - LOLD_AQUAE -
1 PsiBlast_PDB 92.0747%-116 - C1 -2PCJ - LOLD_AQUAE -
4 PsiBlast_PDB 91.6841%-111 - C1 -1L2T - Y796_METJA -
3 PsiBlast_PDB 91.0541%-111 - C1 -1F3O - Y796_METJA -
22 PsiBlast_CBE 89.9341%-114 - C1 -1L2T 6.8 Y796_METJA
23 PsiBlast_CBE 89.4040%-118 - C1 -3TIF 6.3 Y796_METJA
5 PsiBlast_PDB 88.7240%-114 - C1 -3TIF - Y796_METJA -
120 HHSearch 88.4540%-111 - C1 -3TIF - Y796_METJA -
15 PsiBlast_PDB 85.0939%-119 - C1 -4U00 6.0 ?
16 PsiBlast_PDB 84.5339%-113 - C1 -4U02 - ? -
36 PsiBlast_CBE 84.4139%-112 - C1 -4U02 - ? -
34 PsiBlast_CBE 84.0339%-112 - C1 -4U02 - ? -
35 PsiBlast_CBE 82.9539%-118 - C1 -4U02 - ? -
13 PsiBlast_PDB 81.0338% -96 - C1 -1OXV - ? -
32 PsiBlast_CBE 80.3538% -97 - C1 -1OXU - ? -
46 PsiBlast_CBE 79.6936%-105 - C1 -2OUK - ? -
124 Fugue 79.6336%-110 - C1 -3TUZ - METN_ECOLI -
12 PsiBlast_PDB 79.6138% -96 - C1 -1OXU - ? -
49 PsiBlast_CBE 78.8436%-112 - C1 -2OLK 6.3 ?
39 PsiBlast_CBE 78.7836%-107 - C1 -3C41 6.0 ?
51 PsiBlast_CBE 77.8736%-107 - C1 -2OLK 6.4 ?
50 PsiBlast_CBE 77.8036%-107 - C1 -2OLK 6.2 ?
44 PsiBlast_CBE 77.4336%-108 - C1 -2Q0H 5.6 ?
52 PsiBlast_CBE 77.3736%-108 - C1 -2OLK 6.2 ?
40 PsiBlast_CBE 77.2436%-107 - C1 -3C41 6.6 ?
42 PsiBlast_CBE 77.0736%-109 - C1 -3C4J 6.7 ?
54 PsiBlast_CBE 77.0636%-110 - C1 -2OLJ 5.8 ?
41 PsiBlast_CBE 76.1636%-114 - C1 -3C4J 5.3 ?
43 PsiBlast_CBE 75.8936%-109 - C1 -2Q0H 6.1 ?
53 PsiBlast_CBE 75.3236%-103 - C1 -2OLJ 5.9 ?
84 PsiBlast_CBE 72.9237%-102 - C1 -3FVQ 7.7 FBPC_NEIG1
85 PsiBlast_CBE 72.7037%-102 - C1 -3FVQ 7.1 FBPC_NEIG1
38 PsiBlast_CBE 72.6137%-114 - C1 -4YMU 4.4 ?
19 PsiBlast_PDB 72.4437%-112 - C1 -4YMU 5.1 ?
37 PsiBlast_CBE 71.5137%-112 - C1 -4YMV 3.9 ?
20 PsiBlast_PDB 70.4337%-110 - C1 -4YMV 4.8 ?
87 PsiBlast_CBE 67.8331% -88 - C1 -4MKI 3.9 ECFA2_CALS4
86 PsiBlast_CBE 67.3231% -92 - C1 -4MKI 2.0 ECFA2_CALS4
99 PsiBlast_CBE 66.1232%-102 - C1 -2FGK 6.6 HLYBP_ECOLX
101 PsiBlast_CBE 65.8432%-101 - C1 -2FGK 7.3 HLYBP_ECOLX
98 PsiBlast_CBE 64.9932%-103 - C1 -2FGK 7.0
100 PsiBlast_CBE 64.9032%-100 - C1 -2FGK 7.1 HLYBP_ECOLX
102 PsiBlast_CBE 63.2232%-108 - C1 -2FFB 6.1
95 PsiBlast_CBE 62.0332%-109 - C1 -2PMK 6.8
96 PsiBlast_CBE 61.2832%-110 - C1 -2FF7 6.3