@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3025: (2016-02-13 )
MTSAWNEEWRRRRLPALAGQEWDLIVVGGGISGAGILREAARRGWRCLLLEQRDFAWGTSSRSSKMVHGGLRYIAKGQWRLTRDSVRERQRLLGEAPGLVEPLSFVMAHYRGGFPGPRLFGGLLSVYDALAGRRNHRFYDAAALRYLAPGLKEQRLLGGTRFFDAVTDDARLVLRVLAEARHDGGEAFNGMRVRELLREGGQVVGLRAEDRESGELFDFRCRALALATGAWADELRQPGGSEHIRPLRGSHLLLPAWRLPVAHAFSFMHATDRRPVFVFPWEGATVVGTTDLDHRDGLGEDARISRAELDYLLAACAQQFPAAAIEARDVLSTWAGVRPVVSSGDDSGKPSDEKREHVLWREPGCVTLAGGKLTTFRPLAVEVLQACAPLLGRTVTDDGAAVFGACEGPLIDGLGSGQRRRLAGRYGRDLVRLKRLVDTLGTDCVGASETLWAELAFAAEAEMVLHLDDLLLRRTRLGLLLPGGGAAYLPRIRALCQARLGWDDPRWEREQQAYLDLWRRHYSLPV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(3DA1)
?
[Raw transfer]



FAD_A_2(3DA1)
?
[Raw transfer]



FAD_A_3(2RGO)
?
[Raw transfer]



FAD_A_3(2RGH)
?
[Raw transfer]



FAD_A_20(2R46)
GLPD_ECOLI
[Raw transfer]



FAD_A_11(2R4J)
GLPD_ECOLI
[Raw transfer]



FAD_B_16(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_15(2QCU)
GLPD_ECOLI
[Raw transfer]



FAD_A_18(2R45)
GLPD_ECOLI
[Raw transfer]



FAD_B_15(2R4E)
GLPD_ECOLI
[Raw transfer]



FAD_A_14(2R4E)
GLPD_ECOLI
[Raw transfer]



13P_A_16(2R4E)
GLPD_ECOLI
[Raw transfer]
91 HHSearch 90.5131% -87 - C1 -2RGH 12.3 ?
3 PsiBlast_PDB 81.8528% -84 - C1 -2RGO 12.8 ?
90 HHSearch 79.8630% -87 - C1 -3DA1 12.6 ?
1 PsiBlast_PDB 75.8232% -87 - C1 -3DA1 12.6 ?
2 PsiBlast_PDB 75.0733% -96 * C2 *2RGH - ? -
8 PsiBlast_PDB 73.1031% -74 - C1 -2R4J 10.2 GLPD_ECOLI
6 PsiBlast_PDB 72.6131% -72 - C1 -2R46 10.1 GLPD_ECOLI
22 PsiBlast_CBE 72.5431% -73 - C1 -2R46 - GLPD_ECOLI -
4 PsiBlast_PDB 72.4331% -71 - C1 -2QCU 8.2 GLPD_ECOLI
23 PsiBlast_CBE 72.3531% -73 - C1 -2R45 - GLPD_ECOLI -
21 PsiBlast_CBE 72.2531% -73 - C1 -2R4E 11.6 GLPD_ECOLI
5 PsiBlast_PDB 72.1531% -74 - C1 -2R45 7.7 GLPD_ECOLI
7 PsiBlast_PDB 71.7231% -74 - C1 -2R4E 8.2 GLPD_ECOLI
24 PsiBlast_CBE 71.5631% -72 - C1 -2QCU 13.2 GLPD_ECOLI
114 Fugue 57.2523% -66 - C1 -3DME - ? -
93 HHSearch 54.9615% -67 - C1 -1Y56 - ? -
95 HHSearch 53.1622% -59 - C1 -3DME - ? -
94 HHSearch 51.8517% -66 * C1 *2GAG - ? -
92 HHSearch 51.1517% -69 - C1 -1RYI - GLOX_BACSU -
117 Fugue 50.7816% -60 - C1 -1X31 - ? -