@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3155: (2016-02-14 )
MIEFIDLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSKPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD0_A_3(3NUB)
WBPE_PSEAE
[Raw transfer]



UD0_B_6(3NUB)
WBPE_PSEAE
[Raw transfer]



TQP_B_4(3FRK)
?
[Raw transfer]



ULP_A_2(3NYT)
WBPE_PSEAE
[Raw transfer]



PLP_A_2(3NYS)
WBPE_PSEAE
[Raw transfer]



ULP_A_2(3NYT)
WBPE_PSEAE
[Raw transfer]



PMP_A_4(3NU7)
WBPE_PSEAE
[Raw transfer]



PMP_B_6(3NU7)
WBPE_PSEAE
[Raw transfer]



TQP_A_3(3FRK)
?
[Raw transfer]



TQP_A_3(3FRK)
?
[Raw transfer]



PLP_A_5(4QGR)
?
[Raw transfer]



PLP_B_7(4QGR)
?
[Raw transfer]



PMP_A_3(2C81)
GLDSA_BACCI
[Raw transfer]



PMP_A_3(2C81)
GLDSA_BACCI
[Raw transfer]



PLP_A_5(2C7T)
GLDSA_BACCI
[Raw transfer]



GOL_A_8(4LC3)
?
[Raw transfer]



EDO_A_5(4LC3)
?
[Raw transfer]



EDO_B_13(4LC3)
?
[Raw transfer]



EDO_A_6(3UWC)
?
[Raw transfer]



EDO_B_17(4K2I)
NTDA_BACSU
[Raw transfer]
22 PsiBlast_CBE 96.67100%-110 - C1 -3NU7 4.7 WBPE_PSEAE
104 HHSearch 96.09100%-110 - C1 -3NYT 8.7 WBPE_PSEAE
21 PsiBlast_CBE 96.07100%-109 - C1 -3NUB 7.6 WBPE_PSEAE
5 PsiBlast_PDB 95.8899%-110 - C1 -3NYT 8.7 WBPE_PSEAE
6 PsiBlast_PDB 95.5899%-108 - C1 -3NYU - WBPE_PSEAE -
1 PsiBlast_PDB 95.13100%-109 - C1 -3NU7 4.7 WBPE_PSEAE
4 PsiBlast_PDB 95.1199%-109 - C1 -3NYS 5.2 WBPE_PSEAE
24 PsiBlast_CBE 94.8299%-107 - C1 -3NYU - WBPE_PSEAE -
23 PsiBlast_CBE 94.3099%-110 - C1 -3NYU - WBPE_PSEAE -
2 PsiBlast_PDB 94.26100%-107 - C1 -3NUB 8.4 WBPE_PSEAE
7 PsiBlast_PDB 77.8546% -95 - C1 -4QGR 5.3 ?
25 PsiBlast_CBE 77.5446% -96 - C1 -4QGR 5.4 ?
15 PsiBlast_PDB 75.3934%-110 - C1 -1MDX - ARNB_SALTY -
31 PsiBlast_CBE 75.1841%-106 - C1 -3DR4 - GDPPS_CAUCR -
16 PsiBlast_PDB 75.1134%-110 - C1 -1MDZ - ARNB_SALTY -
3 PsiBlast_PDB 75.1199% -72 - C1 -3NU8 - WBPE_PSEAE -
106 HHSearch 75.0341% -95 - C1 -2OGA - DESV_STRVZ -
105 HHSearch 74.9839% -99 - C1 -3FRK 8.5 ?
11 PsiBlast_PDB 74.7941%-106 - C1 -3DR4 - GDPPS_CAUCR -
32 PsiBlast_CBE 74.7341%-106 - C1 -3DR4 - GDPPS_CAUCR -
10 PsiBlast_PDB 74.2939% -97 - C1 -3FRK 8.5 ?
29 PsiBlast_CBE 73.3739% -94 - C1 -3FRK 9.8 ?
17 PsiBlast_PDB 69.0933% -95 - C1 -3UWC 2.2 ?
113 HHSearch 68.0731% -96 - C1 -2C81 2.2 GLDSA_BACCI
34 PsiBlast_CBE 67.4836% -97 - C1 -4K2I 2.8 NTDA_BACSU
36 PsiBlast_CBE 65.6031% -91 - C1 -4LC3 3.0 ?
35 PsiBlast_CBE 64.3631% -92 * C1 *4LC3 2.5 ?
37 PsiBlast_CBE 62.6036%-116 - C1 -2C81 2.5 GLDSA_BACCI
38 PsiBlast_CBE 62.4536%-115 - C1 -2C7T 4.6 GLDSA_BACCI