@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3195: (2016-02-14 )
MTIRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGHFPGEVEHDAESLRVMGDRIAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVNHEVLRASHRIVSNASCTTNCLAPVAQVLHRELGIEHGLMTTIHAYTNDQNLSDVYHPDLYRARSATQSMIPTKTGAAEAVGLVLPELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGSPVLGYNTQPLVSVDFNHDPRSSIFDANHTKVSGRLVKAMAWYDNEWGFSNRMLDSALALAAARD

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_4(3L0D)
?
[Raw transfer]



NAD_A_3(3L0D)
?
[Raw transfer]



NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]



NAD_A_3(3CPS)
?
[Raw transfer]



NAD_A_3(4BOY)
?
[Raw transfer]



NAD_A_3(3ZCX)
?
[Raw transfer]



NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]



NAD_B_4(3ZCX)
?
[Raw transfer]



NAD_B_4(4BOY)
?
[Raw transfer]



NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_B_4(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]



NAD_E_5(1VC2)
?
[Raw transfer]



NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]



NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]



CHAIN_D_4(3ZDF)
?
[Raw transfer]
-
CHAIN_C_3(3ZDF)
?
[Raw transfer]
-
23 PsiBlast_CBE 95.4768%-104 - C4 -3GNQ - ? -
1 PsiBlast_PDB 94.6168%-104 - C4 -3GNQ - ? -
22 PsiBlast_CBE 94.5268%-102 - C4 -3GNQ - ? -
25 PsiBlast_CBE 94.1968%-103 - C4 -3GNQ - ? -
26 PsiBlast_CBE 93.5068%-102 - C4 -3GNQ - ? -
21 PsiBlast_CBE 93.3868%-102 - C4 -3GNQ - ? -
27 PsiBlast_CBE 93.3068%-105 - C4 -3GNQ - ? -
2 PsiBlast_PDB 93.1258%-106 - C4 -3L0D 8.5 ?
24 PsiBlast_CBE 92.6968%-104 - C4 -3GNQ - ? -
30 PsiBlast_CBE 92.1461%-105 - C4 -3DOC - ? -
29 PsiBlast_CBE 91.2761%-103 - C4 -3DOC - ? -
3 PsiBlast_PDB 90.2561%-104 - C4 -3DOC - ? -
121 HHSearch 90.2361%-103 - C4 -3DOC - ? -
31 PsiBlast_CBE 90.0261%-102 - C4 -3DOC - ? -
28 PsiBlast_CBE 89.7058%-104 - C4 -3L0D 7.7 ?
4 PsiBlast_PDB 88.5953%-112 - C4 -2X5J - E4PD_ECOLI -
32 PsiBlast_CBE 88.2953%-113 - C4 -2X5J - E4PD_ECOLI -
122 HHSearch 88.1754%-109 - C4 -2X5J - E4PD_ECOLI -
43 PsiBlast_CBE 88.1353%-113 - C4 -2XF8 - E4PD_ECOLI -
45 PsiBlast_CBE 87.9353%-112 - C4 -2XF8 - E4PD_ECOLI -
127 HHSearch 87.7653% -98 - C4 -2EP7 9.3 G3P_AQUAE
120 HHSearch 86.3050% -95 - C4 -1RM4 8.3 G3PA_SPIOL
89 PsiBlast_CBE 86.3051%-100 - C4 -4BOY 9.1 ?
19 PsiBlast_PDB 86.1051% -97 - C4 -2EP7 9.3 G3P_AQUAE
20 PsiBlast_PDB 85.9851% -98 - C4 -3ZCX 9.4 ?
88 PsiBlast_CBE 85.9151% -98 - C4 -4BOY 9.0 ?
92 PsiBlast_CBE 85.8451% -98 - C4 -3ZCX 9.1 ?
87 PsiBlast_CBE 85.8451% -97 - C4 -2EP7 9.4 G3P_AQUAE
90 PsiBlast_CBE 85.3751% -99 - C4 -3ZDF 4.2 ?
108 Fugue 85.3153% -99 - C4 -1HDG 9.1 G3P_THEMA
91 PsiBlast_CBE 85.1251%-100 - C4 -3ZDF 3.6 ?
125 HHSearch 84.6847%-102 - C4 -3CPS 9.0 ?
123 HHSearch 84.6554% -98 - C4 -1HDG 9.7 G3P_THEMA
128 HHSearch 84.5348%-102 * C4 *3PYM 8.5 G3P3_YEAST
7 PsiBlast_PDB 81.2453% -93 - C4 -1HDG 9.7 G3P_THEMA
53 PsiBlast_CBE 81.1153% -93 - C4 -1HDG 10.0 G3P_THEMA
93 PsiBlast_CBE 79.5651% -98 - C4 -1VC2 8.5 ?
132 HHSearch 78.8344% -97 - C4 -3H9E 8.8 G3PT_HUMAN