@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3324: (2016-02-15 )
MNALLALPDLQPERLFVQSGDVRLAVHCWGAPDNGKPTLLMVHGYPDNHETWLPLIRQLAGRYRIVAYDVRGAGASDKPRWSRDYHLQRLSEDLQAVIRATSPDRPVHLLAHDWGSIQTWESVTDPQCRPLIASYTSISGPCLDHVGFWMREHLRQRSPKALKAVFGQLLHSWYIAFFHTPVVPELLWSAGLARLWPQFLKHAEGVRHPQVNPTQASDGRHGVKLYRGNFIRSLFRPRKRHTEVPVQLIVPTRDRYVGAQLFQHLSLWAPRLWRREASVGHWQLLAEPEQLAGWLGEFIDAQETGESPPALQRAQVRPDASSMNGKLVVVTGAGGGIGRSTLLSFAERGASLLAADLDLEAAERSAELARALGATAHVYQVDVGDTQAMETFAEWVRDTLGVPDVVVSNAGIGMAGPMLDTSPAEWERLLRVNLWSVIDGCRLFGRQMIAANKPGHLVNVASGVAFAPSRNYPAYATSKAAVLMLSECLRAELAGRSIGVTAVCPGFVDTGIVQATRFVGMDAERQARRQAKIQRFYKRRRLSPDTVGEKLVRAVERNKAVVSVGSEVHLGALQWRFAPWATRFLARFDLTS

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_C_11(3WDS)
?
[Raw transfer]



NAD_C_7(3AK4)
?
[Raw transfer]



NAD_B_8(3WDS)
?
[Raw transfer]



NAD_A_2(2GDZ)
PGDH_HUMAN
[Raw transfer]



NAD_B_4(3WYE)
?
[Raw transfer]



NAD_B_6(3AK4)
?
[Raw transfer]



NAP_F_6(1WNT)
DCXR_HUMAN
[Raw transfer]



NAD_A_5(3AK4)
?
[Raw transfer]



NAP_E_5(1PR9)
DCXR_HUMAN
[Raw transfer]



NAP_E_5(1WNT)
DCXR_HUMAN
[Raw transfer]



NAP_F_6(1PR9)
DCXR_HUMAN
[Raw transfer]



NAD_A_5(3WDS)
?
[Raw transfer]



NAP_H_8(1WNT)
DCXR_HUMAN
[Raw transfer]



NAD_D_8(3AK4)
?
[Raw transfer]



NAP_B_4(3D3W)
DCXR_HUMAN
[Raw transfer]



NAD_A_3(3WYE)
?
[Raw transfer]



NAP_G_7(1WNT)
DCXR_HUMAN
[Raw transfer]



NAD_D_18(4WEC)
?
[Raw transfer]



NAD_C_15(4WEC)
?
[Raw transfer]



NAD_B_10(4WEC)
?
[Raw transfer]



NAD_A_5(4WEC)
?
[Raw transfer]



THJ_A_4(3GED)
?
[Raw transfer]
130 Fugue 80.6923% -56 - C1 -3LLS - ? -
50 PsiBlast_CBE 78.7734% -74 - C3 -2D1Y - ? -
51 PsiBlast_CBE 76.6734% -74 - C3 -2D1Y - ? -
49 PsiBlast_CBE 75.7434% -72 - C3 -2D1Y - ? -
13 PsiBlast_PDB 75.6327% -65 - C3 -4URE - ? -
14 PsiBlast_PDB 75.6227% -69 - C3 -4URF - ? -
52 PsiBlast_CBE 75.6034% -75 - C3 -2D1Y - ? -
2 PsiBlast_PDB 74.4638% -68 - C3 -3UF0 - ? -
28 PsiBlast_CBE 74.3938% -68 - C3 -3UF0 - ? -
34 PsiBlast_CBE 74.3332% -76 - C3 -4WEC 7.8 ?
33 PsiBlast_CBE 74.2832% -78 - C3 -4WEC 9.2 ?
11 PsiBlast_PDB 74.2732% -78 - C3 -4WEC 6.2 ?
26 PsiBlast_CBE 74.2633% -62 - C3 -1ZEM - ? -
25 PsiBlast_CBE 74.2533% -63 - C3 -1ZEM - ? -
58 PsiBlast_CBE 74.1331% -81 - C3 -3AK4 9.7 ?
35 PsiBlast_CBE 74.0632% -77 - C3 -4WEC 7.8 ?
21 PsiBlast_CBE 73.9533% -63 - C3 -1ZEM - ? -
22 PsiBlast_CBE 73.5533% -62 - C3 -1ZEM - ? -
23 PsiBlast_CBE 73.5033% -64 - C3 -1ZEM - ? -
18 PsiBlast_PDB 73.4029% -81 - C3 -2PNF - FABG_AQUAE -
54 PsiBlast_CBE 72.9031% -76 - C3 -3WDS 9.9 ?
59 PsiBlast_CBE 72.8931% -78 - C3 -3AK4 9.8 ?
60 PsiBlast_CBE 72.6831% -80 - C3 -3AK4 9.7 ?
57 PsiBlast_CBE 72.1231% -80 - C3 -3AK4 9.8 ?
56 PsiBlast_CBE 72.1131% -78 - C3 -3WDS 9.5 ?
55 PsiBlast_CBE 71.5331% -79 - C3 -3WDS 9.7 ?
40 PsiBlast_CBE 70.0434% -87 - C3 -3D3W 6.1 DCXR_HUMAN
42 PsiBlast_CBE 69.5334% -90 - C3 -1WNT 6.6 DCXR_HUMAN
47 PsiBlast_CBE 69.3333% -83 - C3 -3WYE 8.5 ?
45 PsiBlast_CBE 69.2634% -87 - C3 -1PR9 8.1 DCXR_HUMAN
44 PsiBlast_CBE 69.1734% -87 - C3 -1WNT 7.5 DCXR_HUMAN
10 PsiBlast_PDB 69.0631% -79 - C3 -2GDZ 9.6 PGDH_HUMAN
43 PsiBlast_CBE 69.0134% -85 - C3 -1WNT 6.8 DCXR_HUMAN
46 PsiBlast_CBE 68.9234% -87 - C3 -1PR9 6.8 DCXR_HUMAN
41 PsiBlast_CBE 68.3534% -84 - C3 -1WNT 6.5 DCXR_HUMAN
48 PsiBlast_CBE 66.9833% -80 - C3 -3WYE 8.3 ?