@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3406: (2016-02-16 )
MKLRPASPRNEILATLGRFRPALRSVALFTAVINLLMLAPSLYMLQVYDRVLGSGNHMTLLMLTLMVLGLYLLLGALEWVRSLVVIRLGGQLDMQLNQRIYDASFRASLERGEQAAGQALNDLTSLRQFLTGNALFAFFDAPWFPLYLLVIFLFSPWLGLLALAGALLLVLLAWVNESRSREPLAEAGQLSILATQQASANLRQAETLAAMGMLPAMRARWFAQHQAFLARQNLGSERSAAIGATSKGVRLALQSLVLGLGAWLAVDGLITPGMMIAGSILMGRVLSPIDQLIAVWRQWSGARQAYQRLARLLEENPPAALGMPLPAPRGALRVERLCAAAPGREQALLQDLGFALEPGEALGVIGPSGSGKSTLARLLVGAWQPLSGAVRLDGADLRQWSAAALGPHIGYLAQDVQLFAGSIAENIARFAEVDAEKVVAAARLAGVHDLVLRLPQGYDTRLGDGGAGLSGGQRQRIGLARALYGRPALIVLDEPNASLDEAGEAALAEAIAAMRRQGSSLVLVTHKPAVLALTDKLLLLHGGRLQRFGATAEVLASASPPAAAAPAPAPAPTRPTPAFGFGYRPGPGMPVGGVPGGAAR

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_6(2BBT)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_D_19(3SI7)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ATP_B_10(3SI7)
CFTR_MOUSE
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_A_5(3SI7)
CFTR_MOUSE
[Raw transfer]




ATP_C_14(3SI7)
CFTR_MOUSE
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




105 HHSearch 91.8124%-116 - C2 -3ZDQ - ABCBA_HUMAN -
4 PsiBlast_PDB 85.8924%-112 - C2 -4RY2 - ? -
5 PsiBlast_PDB 84.9623%-113 - C2 -4S0F - ? -
124 Fugue 84.0522% -99 * C1 *3B60 - MSBA_SALTY -
103 HHSearch 82.1522%-104 - C1 -3B60 - MSBA_SALTY -
106 HHSearch 80.4821%-120 - C2 -3WMG - ? -
1 PsiBlast_PDB 79.6726% -96 - C2 -2HYD - Y1866_STAAM -
2 PsiBlast_PDB 78.2126% -94 - C2 -2ONJ - Y1866_STAAM -
18 PsiBlast_PDB 67.6530%-112 - C2 -4Q9I - MDR1A_MOUSE -
3 PsiBlast_PDB 66.7626% -95 - C2 -4A82 - Y1866_STAAM -
20 PsiBlast_PDB 65.9030%-111 - C2 -4Q9K - MDR1A_MOUSE -
36 PsiBlast_CBE 65.6835%-111 - C2 -4AYX 5.0 ABCBA_HUMAN
19 PsiBlast_PDB 65.0530%-112 - C2 -4Q9J - MDR1A_MOUSE -
14 PsiBlast_PDB 64.3733%-103 - C2 -3QF4 - ? -
17 PsiBlast_PDB 63.8330%-113 - C2 -4Q9H - MDR1A_MOUSE -
15 PsiBlast_PDB 63.1933%-101 - C2 -4Q4A - ? -
37 PsiBlast_CBE 62.4835%-104 - C2 -4AYT 5.4 ABCBA_HUMAN
39 PsiBlast_CBE 61.9235% -97 - C2 -1JJ7 5.1
16 PsiBlast_PDB 61.7533% -97 - C2 -4Q4H - ? -
107 HHSearch 61.6233%-104 - C2 -3NH6 - -
12 PsiBlast_PDB 60.4239% -99 - C2 -3NHA 5.6
63 PsiBlast_CBE 60.3334%-106 - C2 -2IXF 6.4 TAP1_RAT
13 PsiBlast_PDB 60.1239% -99 - C2 -3NHB 5.8
11 PsiBlast_PDB 59.6839% -99 - C2 -3NH9 6.1
62 PsiBlast_CBE 59.1834%-105 - C2 -2IXF 6.6
65 PsiBlast_CBE 59.1534%-103 - C2 -2IXF 6.3 TAP1_RAT
43 PsiBlast_CBE 59.1235%-108 - C2 -2PMK 5.6
41 PsiBlast_CBE 58.3435%-104 - C2 -2FF7 5.2
64 PsiBlast_CBE 58.2134%-104 - C2 -2IXF 6.3 TAP1_RAT
56 PsiBlast_CBE 57.6934%-103 - C2 -2FFA 5.4
54 PsiBlast_CBE 57.3434%-105 - C2 -2FGJ 6.3 HLYBP_ECOLX
52 PsiBlast_CBE 57.1334%-106 - C2 -2FGJ 6.0
59 PsiBlast_CBE 57.0934%-104 - C2 -1XEF 5.9 HLYBP_ECOLX
48 PsiBlast_CBE 57.0834%-104 - C2 -2FGK 6.1 HLYBP_ECOLX
60 PsiBlast_CBE 56.9834%-103 - C2 -1XEF 5.3 HLYBP_ECOLX
57 PsiBlast_CBE 56.8334%-104 - C2 -1XEF 5.8
44 PsiBlast_CBE 56.8235%-108 - C2 -3VX4 4.9 ?
46 PsiBlast_CBE 56.1134%-104 - C2 -2FGK 6.1
55 PsiBlast_CBE 55.7934% -98 - C2 -2FGJ 5.8 HLYBP_ECOLX
58 PsiBlast_CBE 55.6134%-106 - C2 -1XEF 5.4 HLYBP_ECOLX
47 PsiBlast_CBE 55.5334%-100 - C2 -2FGK 6.0 HLYBP_ECOLX
49 PsiBlast_CBE 55.0634%-101 - C2 -2FGK 6.3 HLYBP_ECOLX
45 PsiBlast_CBE 52.8035%-103 - C2 -3VX4 5.1 ?
61 PsiBlast_CBE 48.4931%-109 - C2 -5DGX 4.2 ?
79 PsiBlast_CBE 47.3531% -93 - C2 -3SI7 4.6 CFTR_MOUSE
76 PsiBlast_CBE 47.3131% -92 - C2 -3SI7 5.1
77 PsiBlast_CBE 46.5431% -88 - C2 -3SI7 4.4 CFTR_MOUSE
78 PsiBlast_CBE 45.8131% -89 - C2 -3SI7 3.7 CFTR_MOUSE
70 PsiBlast_CBE 44.6931%-102 - C2 -2BBT 5.3
67 PsiBlast_CBE 41.5740% -89 - C2 -2IXE 6.6 TAP1_RAT