@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4179: (2016-02-24 )
MSSPFSPRSPRTLRGLGALALCGGFVAPAPAAFLEDGSARLEARTVYFNRDFRDGSSANPQGASKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIKLDSSPADSNSGLLPSSGHDPRRSVDQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTARDSSDAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C8E_B_4(3SZD)
?
[Raw transfer]



C8E_A_12(3SZD)
?
[Raw transfer]



C8E_B_4(3SZD)
?
[Raw transfer]



C8E_A_9(2ODJ)
PORD_PSEAE
[Raw transfer]



C8E_B_9(4FRX)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_B_24(3SYS)
?
[Raw transfer]



C8E_A_7(3SZV)
?
[Raw transfer]



C8E_A_9(3SYS)
?
[Raw transfer]



C8E_A_13(2Y0H)
?
[Raw transfer]



C8E_A_9(2Y2X)
?
[Raw transfer]



C8E_B_24(2Y2X)
?
[Raw transfer]



C8E_A_9(2Y2X)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_A_8(2QTK)
?
[Raw transfer]



C8E_A_9(2Y0K)
?
[Raw transfer]



C8E_A_2(3SY7)
PORD_PSEAE
[Raw transfer]



C8E_B_5(2QTK)
?
[Raw transfer]
2 PsiBlast_PDB 95.7250% -36 - C8 -3T20 - ? -
37 HHSearch 95.2051% -30 - C8 -2Y0L - ? -
1 PsiBlast_PDB 95.1050% -34 - C8 -2Y0L - ? -
7 PsiBlast_PDB 95.0240% -33 - C8 -4FRX - ? -
21 PsiBlast_CBE 94.3843% -34 - C8 -3T24 - ? -
22 PsiBlast_CBE 93.9543% -33 - C8 -3T24 - ? -
23 PsiBlast_CBE 93.5740% -27 - C8 -4FRX 3.5 ?
3 PsiBlast_PDB 93.0443% -33 - C8 -3T24 - ? -
27 PsiBlast_CBE 92.3141% -30 - C8 -2Y2X 3.9 ?
12 PsiBlast_PDB 91.8342% -27 - C8 -3SZD 2.0 ?
14 PsiBlast_PDB 91.7341% -33 - C8 -3SYS 3.2 ?
29 PsiBlast_CBE 91.5339% -28 - C8 -3JTY - ? -
33 HHSearch 91.4842% -31 - C8 -2Y2X 3.2 ?
24 PsiBlast_CBE 91.4842% -26 - C8 -3SZD 2.4 ?
16 PsiBlast_PDB 91.4741% -33 - C8 -2Y2X 3.2 ?
40 HHSearch 91.2243% -27 - C8 -3T24 - ? -
10 PsiBlast_PDB 91.1941% -40 - C8 -3T0S - ? -
6 PsiBlast_PDB 91.1444% -27 - C8 -4FT6 - ? -
5 PsiBlast_PDB 91.0944% -35 - C8 -4FSP - ? -
13 PsiBlast_PDB 91.0842% -28 - C8 -4FMS 1.6 ?
26 PsiBlast_CBE 90.4141% -33 - C8 -3SYS 3.8 ?
25 PsiBlast_CBE 90.3042% -31 - C8 -4FMS 1.8 ?
39 HHSearch 89.0940% -35 - C8 -2Y0H 2.7 ?
15 PsiBlast_PDB 88.4041% -30 - C8 -2QTK 2.3 ?
36 HHSearch 88.1042% -33 - C8 -3SZV 2.0 ?
28 PsiBlast_CBE 87.9641% -29 - C8 -2QTK 3.1 ?
8 PsiBlast_PDB 85.7642% -33 - C8 -2Y0K 2.4 ?
18 PsiBlast_PDB 82.1834% -28 - C8 -3SY7 1.6 PORD_PSEAE
19 PsiBlast_PDB 81.1233% -26 - C8 -2ODJ 2.8 PORD_PSEAE