@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4406: (2016-02-27 )
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFCRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMRPAAAV

Atome Classification :

(68 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

L63_C_25(4FW7)
LPXC_PSEAE
[Raw transfer]




L59_C_24(4FW6)
LPXC_PSEAE
[Raw transfer]




L59_B_15(4FW6)
LPXC_PSEAE
[Raw transfer]




L52_C_11(4FW3)
LPXC_PSEAE
[Raw transfer]




L52_A_6(4FW3)
LPXC_PSEAE
[Raw transfer]




L63_B_15(4FW7)
LPXC_PSEAE
[Raw transfer]




1JS_A_5(4J3D)
LPXC_PSEAE
[Raw transfer]




L52_D_13(4FW3)
LPXC_PSEAE
[Raw transfer]




L59_A_6(4FW6)
LPXC_PSEAE
[Raw transfer]




L58_C_16(4FW5)
LPXC_PSEAE
[Raw transfer]




3P3_D_15(4FW4)
LPXC_PSEAE
[Raw transfer]




2SZ_A_4(4OKG)
LPXC_PSEAE
[Raw transfer]




1JS_B_8(4J3D)
LPXC_PSEAE
[Raw transfer]




2SZ_B_6(4OKG)
LPXC_PSEAE
[Raw transfer]




L52_B_9(4FW3)
LPXC_PSEAE
[Raw transfer]




3P3_C_11(4FW4)
LPXC_PSEAE
[Raw transfer]




3P3_B_8(4FW4)
LPXC_PSEAE
[Raw transfer]




L63_A_6(4FW7)
LPXC_PSEAE
[Raw transfer]




1WM_A_4(4LCG)
LPXC_PSEAE
[Raw transfer]




1WN_A_5(4LCH)
LPXC_PSEAE
[Raw transfer]




L58_B_10(4FW5)
LPXC_PSEAE
[Raw transfer]




L58_D_20(4FW5)
LPXC_PSEAE
[Raw transfer]




L58_A_6(4FW5)
LPXC_PSEAE
[Raw transfer]




3P3_A_6(4FW4)
LPXC_PSEAE
[Raw transfer]




24G_A_6(4MDT)
?
[Raw transfer]




03I_B_6(3U1Y)
LPXC_PSEAE
[Raw transfer]




1WL_A_4(4LCF)
LPXC_PSEAE
[Raw transfer]




RFN_A_3(3UHM)
LPXC_PSEAE
[Raw transfer]




C90_A_3(3NZK)
?
[Raw transfer]




P76_A_3(3P76)
LPXC_AQUAE
[Raw transfer]




GVR_C_12(2VES)
LPXC_PSEAE
[Raw transfer]




24G_D_15(4MDT)
?
[Raw transfer]




24G_B_13(4OZE)
LPXC_AQUAE
[Raw transfer]




RFN_A_3(3UHM)
LPXC_PSEAE
[Raw transfer]




GVR_B_8(2VES)
LPXC_PSEAE
[Raw transfer]




C90_B_6(3NZK)
?
[Raw transfer]




GVR_A_5(2VES)
LPXC_PSEAE
[Raw transfer]




2CW_A_3(4MQY)
?
[Raw transfer]




3BX_A_6(4U3D)
LPXC_AQUAE
[Raw transfer]




GVR_A_3(4ISA)
?
[Raw transfer]




TUX_B_10(2GO4)
LPXC_AQUAE
[Raw transfer]




24G_B_9(4MDT)
?
[Raw transfer]




3BW_A_7(4U3B)
LPXC_AQUAE
[Raw transfer]




24G_C_12(4MDT)
?
[Raw transfer]




LTF_B_7(4IS9)
?
[Raw transfer]




PLM_B_12(2IES)
LPXC_AQUAE
[Raw transfer]




LTF_A_5(4IS9)
?
[Raw transfer]




PAM_B_12(1YH8)
LPXC_AQUAE
[Raw transfer]




PLM_A_8(2IES)
LPXC_AQUAE
[Raw transfer]




MYR_A_10(1P42)
LPXC_AQUAE
[Raw transfer]




MYR_A_10(1P42)
LPXC_AQUAE
[Raw transfer]




MYR_B_11(1P42)
LPXC_AQUAE
[Raw transfer]




PAM_A_16(1YHC)
LPXC_AQUAE
[Raw transfer]




MYR_B_11(2GO3)
LPXC_AQUAE
[Raw transfer]




PAM_B_15(1YHC)
LPXC_AQUAE
[Raw transfer]




AI7_B_12(2O3Z)
LPXC_AQUAE
[Raw transfer]




MYR_B_16(2J65)
LPXC_AQUAE
[Raw transfer]




UDP_B_13(2IER)
LPXC_AQUAE
[Raw transfer]




PLM_A_10(2GO3)
LPXC_AQUAE
[Raw transfer]




UDP_A_12(2IER)
LPXC_AQUAE
[Raw transfer]




24G_B_13(4OZE)
LPXC_AQUAE
[Raw transfer]




24G_B_13(4OZE)
LPXC_AQUAE
[Raw transfer]




AI7_B_12(2O3Z)
LPXC_AQUAE
[Raw transfer]




TUX_B_10(2GO4)
LPXC_AQUAE
[Raw transfer]




PAM_B_12(1YH8)
LPXC_AQUAE
[Raw transfer]




MYR_B_16(2J65)
LPXC_AQUAE
[Raw transfer]




29 PsiBlast_CBE 99.5599%-108 - C8 -4FW5 7.2 LPXC_PSEAE
34 PsiBlast_CBE 99.1599%-106 - C8 -4FW3 6.6 LPXC_PSEAE
2 PsiBlast_PDB 98.9199%-105 - C8 -4FW4 7.9 LPXC_PSEAE
38 PsiBlast_CBE 98.8399%-103 - C8 -2VES 6.0 LPXC_PSEAE
3 PsiBlast_PDB 98.6699%-109 - C8 -4FW5 7.3 LPXC_PSEAE
22 PsiBlast_CBE 98.5499%-105 - C8 -4FW7 6.7 LPXC_PSEAE
32 PsiBlast_CBE 98.5399%-107 - C8 -4FW4 7.5 LPXC_PSEAE
31 PsiBlast_CBE 98.5099%-102 - C8 -4FW4 8.0 LPXC_PSEAE
9 PsiBlast_PDB 98.4699%-105 - C8 -4LCF 7.4 LPXC_PSEAE
21 PsiBlast_CBE 98.3499%-103 - C8 -4FW7 - LPXC_PSEAE -
33 PsiBlast_CBE 98.3399%-106 - C8 -4FW3 7.1 LPXC_PSEAE
30 PsiBlast_CBE 98.3199%-103 - C8 -4FW4 8.0 LPXC_PSEAE
11 PsiBlast_PDB 98.1699%-104 - C8 -4LCH 6.9 LPXC_PSEAE
23 PsiBlast_CBE 98.0799%-103 - C8 -4FW7 6.5 LPXC_PSEAE
7 PsiBlast_PDB 98.0699%-105 - C8 -3U1Y - LPXC_PSEAE -
37 PsiBlast_CBE 97.9599%-102 - C8 -3U1Y 8.5 LPXC_PSEAE
4 PsiBlast_PDB 97.9099%-106 - C8 -4FW6 6.9 LPXC_PSEAE
35 PsiBlast_CBE 97.8699%-107 - C8 -4FW3 7.2 LPXC_PSEAE
5 PsiBlast_PDB 97.8399%-105 - C8 -4FW7 6.8 LPXC_PSEAE
26 PsiBlast_CBE 97.7299%-106 - C8 -4FW6 6.8 LPXC_PSEAE
12 PsiBlast_PDB 97.6899%-106 - C8 -4OKG 9.3 LPXC_PSEAE
25 PsiBlast_CBE 97.6099%-102 - C8 -4FW6 7.0 LPXC_PSEAE
39 PsiBlast_CBE 97.5199%-101 - C8 -2VES 6.1 LPXC_PSEAE
8 PsiBlast_PDB 97.5199%-103 - C8 -3UHM 6.5 LPXC_PSEAE
10 PsiBlast_PDB 97.4999%-105 - C8 -4LCG 7.5 LPXC_PSEAE
28 PsiBlast_CBE 97.4599%-102 - C8 -4FW5 7.6 LPXC_PSEAE
1 PsiBlast_PDB 97.4299%-104 - C8 -4FW3 6.6 LPXC_PSEAE
6 PsiBlast_PDB 97.3999% -99 - C8 -2VES 5.6 LPXC_PSEAE
27 PsiBlast_CBE 97.2099%-101 - C8 -4FW5 7.7 LPXC_PSEAE
77 HHSearch 97.1899%-104 - C8 -3UHM 6.5 LPXC_PSEAE
36 PsiBlast_CBE 96.8999%-103 - C8 -4OKG 8.6 LPXC_PSEAE
13 PsiBlast_PDB 95.62100%-105 - C8 -4J3D 6.8 LPXC_PSEAE
40 PsiBlast_CBE 93.73100% -98 - C8 -4J3D 7.4 LPXC_PSEAE
41 PsiBlast_CBE 88.8858% -95 - C8 -3NZK 6.6 ?
18 PsiBlast_PDB 88.3658% -96 - C8 -4ISA 5.9 ?
14 PsiBlast_PDB 87.7658%-101 - C8 -3NZK 7.2 ?
15 PsiBlast_PDB 86.9857% -96 - C8 -4MQY 6.1 ?
17 PsiBlast_PDB 86.8958% -93 - C8 -4IS9 5.1 ?
16 PsiBlast_PDB 86.8357% -92 - C8 -4MDT 7.3 ?
45 PsiBlast_CBE 86.7258%-100 - C8 -4IS9 5.1 ?
44 PsiBlast_CBE 86.6757% -92 - C8 -4MDT 6.9 ?
43 PsiBlast_CBE 86.5957% -93 - C8 -4MDT 6.7 ?
42 PsiBlast_CBE 86.3057% -92 - C8 -4MDT 6.1 ?
67 Fugue 73.4836% -73 - C8 -4OZE 1.7 LPXC_AQUAE
68 Fugue 73.2035% -78 - C8 -1P42 3.7 LPXC_AQUAE
56 PsiBlast_CBE 72.6936% -71 - C8 -2J65 2.0 LPXC_AQUAE
66 PsiBlast_CBE 72.5436% -72 * C8 *4OZE 1.7 LPXC_AQUAE
63 PsiBlast_CBE 72.3236% -70 - C8 -2GO3 3.8 LPXC_AQUAE
47 PsiBlast_CBE 72.2836% -68 - C8 -1YHC 3.8 LPXC_AQUAE
65 PsiBlast_CBE 72.1236% -75 - C8 -4OZE 7.3 LPXC_AQUAE
49 PsiBlast_CBE 72.0036% -69 - C8 -1P42 3.9 LPXC_AQUAE
62 PsiBlast_CBE 71.9936% -68 - C8 -2GO4 2.5 LPXC_AQUAE
61 PsiBlast_CBE 71.7936% -68 - C8 -2GO4 4.4 LPXC_AQUAE
55 PsiBlast_CBE 71.7036% -72 - C8 -2J65 3.7 LPXC_AQUAE
51 PsiBlast_CBE 71.6536% -71 - C8 -4U3B 5.5 LPXC_AQUAE
52 PsiBlast_CBE 71.6436% -69 - C8 -3P76 6.7 LPXC_AQUAE
20 PsiBlast_PDB 71.6236% -69 - C8 -1YH8 2.4 LPXC_AQUAE
50 PsiBlast_CBE 71.5936% -71 - C8 -4U3D 6.6 LPXC_AQUAE
46 PsiBlast_CBE 71.4936% -70 - C8 -1YHC 3.7 LPXC_AQUAE
59 PsiBlast_CBE 71.4336% -69 - C8 -2IER 4.2 LPXC_AQUAE
48 PsiBlast_CBE 71.4336% -69 - C8 -1YH8 4.3 LPXC_AQUAE
54 PsiBlast_CBE 71.2936% -72 - C8 -2O3Z 2.5 LPXC_AQUAE
19 PsiBlast_PDB 71.2336% -69 - C8 -1P42 3.7 LPXC_AQUAE
60 PsiBlast_CBE 70.7836% -69 - C8 -2IER 4.3 LPXC_AQUAE
64 PsiBlast_CBE 70.7736% -71 - C8 -2GO3 3.9 LPXC_AQUAE
53 PsiBlast_CBE 70.7736% -71 - C8 -2O3Z 3.2 LPXC_AQUAE
58 PsiBlast_CBE 70.5436% -70 - C8 -2IES 4.8 LPXC_AQUAE
57 PsiBlast_CBE 70.5236% -70 - C8 -2IES 4.3 LPXC_AQUAE