@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4910: (2016-03-02 )
MSDKILSVEHLMMHFGGIKALNDVNLDVERGSITALIGPNGAGKTTVFNCLTGFYKATGGNILLNTQGRTTDVIQVLGEPFQLDDFVKPPQLGSRLYYKMFGGTHLVNRAGLARTFQNIRLFKDMSVVENLLVAQHMFVNRNLLAGILNTPGYRRAESEALDHAFYWLEVVDLVDCANRLAGEMSYGQQRRLEIARAMCTRPELICLDEPAAGLNPAETHALSNIVRYLRDHHGITVLLIEHDMGMVMNISDHIIVLDHGDVIARGNPEQIRHDEKVIAAYLGADEEELS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ATP_A_2(1JI0)
?
[Raw transfer]




ATP_A_2(1JI0)
?
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ADP_B_10(1G9X)
LIVG_METJA
[Raw transfer]




ADP_A_8(1G9X)
LIVG_METJA
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_A_4(1G6H)
LIVG_METJA
[Raw transfer]




ADP_C_12(1G9X)
LIVG_METJA
[Raw transfer]




3 PsiBlast_PDB 91.4234%-138 - C1 -1G6H 6.1 LIVG_METJA
1 PsiBlast_PDB 89.4234%-129 - C1 -1GAJ - LIVG_METJA -
65 Fugue 89.1027%-129 - C1 -3TUZ - METN_ECOLI -
61 Fugue 88.0525%-120 - C1 -1OXS - ? -
54 HHSearch 88.0237%-126 - C1 -1G6H 6.2 LIVG_METJA
63 Fugue 87.1426%-129 - C1 -1Z47 - ? -
2 PsiBlast_PDB 86.8334%-125 - C1 -1G9X 6.1 LIVG_METJA
56 Fugue 86.3636%-131 - C1 -1G6H 6.2 LIVG_METJA
21 PsiBlast_CBE 86.2334%-121 - C1 -1G9X 4.2 LIVG_METJA
22 PsiBlast_CBE 85.4334%-133 - C1 -1G9X 5.6 LIVG_METJA
4 PsiBlast_PDB 84.1728%-137 - C1 -1JI0 7.0 ?
5 PsiBlast_PDB 83.2328%-136 - C1 -4WBS - ? -
46 HHSearch 81.2531%-133 - C1 -1JI0 7.0 ?
15 PsiBlast_PDB 80.8427%-132 - C1 -4P33 - LPTB_ECOLI -
42 HHSearch 80.7026%-123 * C1 *3TUI - METN_ECOLI -
13 PsiBlast_PDB 80.2627%-130 - C1 -4P32 - LPTB_ECOLI -
45 HHSearch 80.0227%-127 - C1 -2OLJ - ? -
14 PsiBlast_PDB 80.0227%-121 - C1 -4QC2 7.4 ?
12 PsiBlast_PDB 79.7926%-120 - C1 -1Z47 - ? -
6 PsiBlast_PDB 79.7925%-131 - C1 -2IT1 - ? -