@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5094: (2016-03-04 )
MSGAQMNKIEVKNVFKIFGPRADAALALIRQGRSKGEVLAQTGCVVGVNDLSLSIGAGEIFVIMGLSGSGKSTLVRHFNRLIDPTSGEILVDGEDILRYDMEALRQFRRRKISMVFQSFGLLPHKSVLDNVAYGLKVRGESRAQCHERALHWIATVGLKGYEKSYPHQLSGGMRQRVGLARALAADTEIILMDEAFSALDPLIRADMQDQLLELQKTLHKTIVFITHDLDEAVRIGNRIAILKDGQLIQVGTPREILHQPADDYVDRFVQRRVANL

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




105 Fugue 90.5036%-112 - C1 -3TUZ - METN_ECOLI -
107 Fugue 88.9833%-111 - C1 -1Z47 - ? -
117 HHSearch 82.9136%-114 - C1 -2IT1 - ? -
21 PsiBlast_CBE 82.6135%-118 - C1 -2IT1 - ? -
1 PsiBlast_PDB 82.3035%-115 - C1 -2IT1 - ? -
10 PsiBlast_PDB 82.2738%-111 - C1 -2D62 - ? -
112 Fugue 82.0232%-102 - C1 -4F4C - PGP1_CAEEL -
106 Fugue 81.9633%-102 - C1 -1OXS - ? -
4 PsiBlast_PDB 81.3537%-114 - C1 -3TUZ - METN_ECOLI -
88 PsiBlast_CBE 81.2835%-120 - C1 -1B0U 4.0 HISP_SALTY
116 HHSearch 81.0537%-124 - C1 -1V43 - ? -
8 PsiBlast_PDB 80.9037%-128 - C1 -1V43 - ? -
3 PsiBlast_PDB 80.4037%-111 - C1 -3TUI - METN_ECOLI -
25 PsiBlast_CBE 80.3937%-115 - C1 -3TUI - METN_ECOLI -
6 PsiBlast_PDB 80.3140%-115 - C1 -4U02 - ? -
7 PsiBlast_PDB 80.0437%-126 - C1 -1VCI - ? -
28 PsiBlast_CBE 79.8540%-117 - C1 -4U02 - ? -
30 PsiBlast_CBE 79.7340%-119 - C1 -4U02 - ? -
14 PsiBlast_PDB 79.6837%-120 - C1 -4YMV 3.8 ?
23 PsiBlast_CBE 79.5337%-112 - C1 -3TUZ - METN_ECOLI -
13 PsiBlast_PDB 78.6037%-118 - C1 -4YMU 4.6 ?
31 PsiBlast_CBE 77.8737%-116 - C1 -4YMV 3.7 ?
32 PsiBlast_CBE 77.0237%-118 - C1 -4YMU 4.3 ?
75 PsiBlast_CBE 74.3140%-109 - C1 -3FVQ 5.4 FBPC_NEIG1
59 PsiBlast_CBE 73.4936%-110 - C1 -3C4J 3.3 ?
76 PsiBlast_CBE 73.4140%-105 - C1 -3FVQ 4.6 FBPC_NEIG1
67 PsiBlast_CBE 73.2236%-106 - C1 -2OLK 4.1 ?
68 PsiBlast_CBE 72.0736%-106 - C1 -2OLK 4.1 ?
69 PsiBlast_CBE 71.8036%-107 - C1 -2OLK 3.9 ?
70 PsiBlast_CBE 71.4836%-105 - C1 -2OLK 3.8 ?
86 PsiBlast_CBE 71.2139%-113 - C1 -3TIF 4.4 Y796_METJA
72 PsiBlast_CBE 71.2036%-108 - C1 -2OLJ 3.9 ?
57 PsiBlast_CBE 70.9536%-106 - C1 -3C41 3.9 ?
60 PsiBlast_CBE 70.2736%-106 - C1 -3C4J 4.7 ?
62 PsiBlast_CBE 70.0536%-104 - C1 -2Q0H 3.4 ?
84 PsiBlast_CBE 69.8839%-108 - C1 -1L2T 5.3 Y796_METJA
58 PsiBlast_CBE 69.7936%-103 - C1 -3C41 5.1 ?
85 PsiBlast_CBE 69.6039%-103 - C1 -1L2T 4.9 Y796_METJA
71 PsiBlast_CBE 69.1736%-102 - C1 -2OLJ 3.7 ?
61 PsiBlast_CBE 69.1336% -98 - C1 -2Q0H 3.8 ?
87 PsiBlast_CBE 68.6639%-102 - C1 -3TIF 4.4 Y796_METJA
101 PsiBlast_CBE 63.4632%-102 - C1 -2FGK 6.1 HLYBP_ECOLX
102 PsiBlast_CBE 63.0132%-101 - C1 -2FGK 6.1 HLYBP_ECOLX
99 PsiBlast_CBE 62.6632%-103 - C1 -2FGK 6.1
96 PsiBlast_CBE 62.5133% -99 - C1 -2FF7 5.0
100 PsiBlast_CBE 62.3132%-102 - C1 -2FGK 5.6 HLYBP_ECOLX
98 PsiBlast_CBE 62.1333%-102 - C1 -2PMK 5.3
103 PsiBlast_CBE 61.4932% -98 - C1 -2FFB 5.0