@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5147: (2016-03-05 )
MTPEGFNGAVLDWYDRHGRKDLPWQQGITPYRVWVSEIMLQQTQVSTVLGYFDRFMAALPDVEALAAAAEDEVLHLWTGLGYYSRARNLHKTAQIVVERHAGEFPRDVEQLAELPGIGRSTAGAIASLSMGLRAPILDGNVKRVLARYLAQDGYPGEPKVARALWEAAERFTPHARVNHYTQAMMDLGATLCTRSKPSCLLCPLVSGCRAHLLGREADYPQPKPRKALPQKRTLMPILANRDGAILLYRRPSSGLWGGLWSLPELDDLDGLEPLAARHSLALGERRELSGLTHTFSHFQLAIEPWLVAVEGAPRAVAEGDWLWYNLATPPRLGLAAPVKKLLKRAEQELGRGTAA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADE_A_6(1VRL)
?
[Raw transfer]



EDO_A_3(1WEG)
MUTY_ECOLI
[Raw transfer]



GOL_A_7(1KG5)
MUTY_ECOLI
[Raw transfer]



NACID_B_2(3FSP)
?
[Raw transfer]
-
NACID_B_2(3FSP)
?
[Raw transfer]
-
NACID_B_2(3G0Q)
?
[Raw transfer]
-
NACID_B_1(1RRS)
?
[Raw transfer]
-
NACID_D_4(4YPR)
?
[Raw transfer]
-
NACID_B_2(4YPH)
?
[Raw transfer]
-
NACID_B_1(1VRL)
?
[Raw transfer]
-
NACID_B_1(1RRQ)
?
[Raw transfer]
-
NACID_B_1(1RRQ)
?
[Raw transfer]
-
NACID_F_6(4YPR)
?
[Raw transfer]
-
NACID_B_2(4YOQ)
?
[Raw transfer]
-
4 PsiBlast_PDB 88.4460%-113 - C6 -1KG3 - MUTY_ECOLI -
8 PsiBlast_PDB 88.2660%-111 - C6 -1MUN - MUTY_ECOLI -
6 PsiBlast_PDB 88.0060%-115 - C6 -1KG5 2.3 MUTY_ECOLI
48 Fugue 87.8833%-102 - C6 -1RRQ 10.8 ?
2 PsiBlast_PDB 87.8860%-111 - C6 -1MUY - MUTY_ECOLI -
27 HHSearch 87.6561%-109 - C6 -1KG2 - MUTY_ECOLI -
25 HHSearch 87.3133%-106 - C6 -3FSP 11.2 ?
7 PsiBlast_PDB 87.3160%-111 - C6 -1MUD - MUTY_ECOLI -
3 PsiBlast_PDB 87.2860%-109 - C6 -1KG2 - MUTY_ECOLI -
5 PsiBlast_PDB 87.0860%-110 - C6 -1KG6 - MUTY_ECOLI -
10 PsiBlast_PDB 87.0060%-111 - C6 -1WEG 2.6 MUTY_ECOLI
9 PsiBlast_PDB 86.9760%-112 - C6 -1KG4 - MUTY_ECOLI -
1 PsiBlast_PDB 86.4561%-111 - C6 -1KG7 - MUTY_ECOLI -
13 PsiBlast_PDB 86.3360%-107 - C6 -1KQJ - MUTY_ECOLI -
11 PsiBlast_PDB 86.2960%-110 - C6 -1WEF - MUTY_ECOLI -
16 PsiBlast_PDB 83.8839%-103 - C6 -1VRL 9.7 ?
14 PsiBlast_PDB 83.8539%-105 - C6 -3FSP 10.6 ?
22 PsiBlast_CBE 83.5138% -99 - C6 -4YPR 11.6 ?
15 PsiBlast_PDB 83.2339%-104 - C6 -1RRS 9.1 ?
17 PsiBlast_PDB 83.0439%-104 - C6 -4YOQ 11.5 ?
21 PsiBlast_CBE 82.6438%-101 - C6 -4YPR 12.8 ?
18 PsiBlast_PDB 82.5739%-108 - C6 -4YPH 9.5 ?
20 PsiBlast_PDB 81.6838%-104 - C6 -1RRQ 10.2 ?
19 PsiBlast_PDB 81.1939%-103 - C6 -3G0Q 10.8 ?