@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5479: (2016-03-08 )
MGKAKLSLAWQIVIGLALGIAVGAVLNHFSAEKAWWIANVLQPAGDIFIRLIKMIVVPIVISSLVVGIAGVGDAKKLGRIGLKTIIYFEIVTTVAIVVGLLLANLFQPGTGIDMSTLGTVDISQYQKTTQEVQHDHAFIATILNLIPSNVFAAIARGEMLPIIFFSVMFGLGLSSLPNDLREPLVKVFQGVSETMFKVTHMIMKYAPIGVFALIAVTVANFGFASLLPLAKLVILVYVAIVFFALVVLGLIARMFGFSIMRLIRIFKDDLVLAYSTASSETVLPRIIEKMEAYGAPKAISSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIGQQIMLVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRIMDMARTALNVIGNALAVLVISKWEGMYDAAKGQRYWDSLPHLRQAVGEAKGKQATLE

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_B_8(3V8F)
?
[Raw transfer]



TB1_F_6(2NWW)
?
[Raw transfer]



TB1_E_5(2NWW)
?
[Raw transfer]



ASP_C_12(3V8F)
?
[Raw transfer]



ASP_B_5(3KBC)
?
[Raw transfer]



ASP_C_6(3KBC)
?
[Raw transfer]



ASP_C_14(4IZM)
?
[Raw transfer]



ASP_B_10(4IZM)
?
[Raw transfer]



ASP_B_7(4X2S)
?
[Raw transfer]



ASP_C_10(4X2S)
?
[Raw transfer]



ASP_A_10(2NWX)
?
[Raw transfer]



ASP_A_10(2NWX)
?
[Raw transfer]



ASP_D_4(2NWL)
?
[Raw transfer]



ASP_D_4(2NWL)
?
[Raw transfer]



ASP_D_4(2NWL)
?
[Raw transfer]



ASP_D_4(2NWL)
?
[Raw transfer]
51 PsiBlast_CBE 87.6837%-163 - C9 -4KY0 - ? -
25 PsiBlast_CBE 86.2837%-161 - C9 -3V8G - ? -
22 PsiBlast_CBE 86.0637%-161 - C9 -3V8G - ? -
14 PsiBlast_PDB 84.5337%-166 - C9 -4KY0 - ? -
52 PsiBlast_CBE 84.1137%-165 - C9 -4KY0 - ? -
23 PsiBlast_CBE 83.3637%-160 - C9 -3V8G - ? -
44 PsiBlast_CBE 83.1436%-162 - C9 -4P1A - ? -
43 PsiBlast_CBE 83.0536%-162 - C9 -4P1A - ? -
1 PsiBlast_PDB 83.0237%-160 - C9 -3V8G - ? -
41 PsiBlast_CBE 82.7936%-164 - C9 -4P3J - ? -
8 PsiBlast_PDB 82.7836%-162 - C9 -4P19 - ? -
9 PsiBlast_PDB 82.7636%-162 - C9 -4P1A - ? -
42 PsiBlast_CBE 82.6536%-165 - C9 -4P3J - ? -
27 PsiBlast_CBE 82.5337%-157 - C9 -3V8F 3.9 ?
11 PsiBlast_PDB 82.5236%-156 - C9 -4P6H - ? -
46 PsiBlast_CBE 82.4736%-164 - C9 -4P19 - ? -
12 PsiBlast_PDB 82.4536%-156 - C9 -3KBC - ? -
2 PsiBlast_PDB 82.4237%-157 - C9 -3V8F - ? -
61 Fugue 82.3638%-157 - C9 -4OYF - ? -
45 PsiBlast_CBE 82.3536%-161 - C9 -4P19 - ? -
26 PsiBlast_CBE 82.3437%-157 - C9 -3V8F 3.9 ?
48 PsiBlast_CBE 82.1536%-157 - C9 -3KBC 3.6 ?
47 PsiBlast_CBE 81.9036%-157 - C9 -3KBC 3.6 ?
35 PsiBlast_CBE 81.5836%-154 - C9 -2NWW 4.0 ?
36 PsiBlast_CBE 81.0136%-156 - C9 -2NWW 3.6 ?
34 PsiBlast_CBE 80.8436%-155 - C9 -2NWX 4.1 ?
70 HHSearch 80.8237%-155 * C9 *2NWL 4.4 ?
33 PsiBlast_CBE 80.2536%-152 - C9 -2NWX 4.1 ?
37 PsiBlast_CBE 79.6836%-161 - C9 -4X2S 3.1 ?
38 PsiBlast_CBE 79.1836%-161 - C9 -4X2S 3.2 ?
49 PsiBlast_CBE 79.1136%-153 - C9 -4IZM 5.3 ?
50 PsiBlast_CBE 78.9336%-150 - C9 -4IZM 4.6 ?
59 PsiBlast_CBE 78.7736%-152 - C9 -2NWL 4.0 ?
58 PsiBlast_CBE 77.6636%-150 - C9 -2NWL 4.0 ?
17 PsiBlast_PDB 77.4936%-152 - C9 -2NWL 4.4 ?